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The map label for this gene is ygjM [C]

Identifier: 183221635

GI number: 183221635

Start: 2331541

End: 2331945

Strand: Direct

Name: ygjM [C]

Synonym: LEPBI_I2259

Alternate gene names: 183221635

Gene position: 2331541-2331945 (Clockwise)

Preceding gene: 183221634

Following gene: 183221636

Centisome position: 64.77

GC content: 34.07

Gene sequence:

>405_bases
ATGAACATTAAACCTATTAAAAATCAAAAAGATCACTTAGATGCACTTTCTGAGATAGAAAAACTCTGGGATGCTAAGAA
AAATACACCCGAATACGACAAATTAGATATTTTAATTACCTTAGTTGATGCTTACGAAACTAAACACTACCCTATTGATG
ATCCGGATCCAATTGAAGCTTTAAAATCGGTTATGGATGACATGAACATGAAAAGTGTTGATTTGGGAAATCTCATCGGC
GGGCGAAGTCGTGCCACTGAAATCTTAAATCGAAAGAGAAAGCTTACTTTAGAAATGATTAGAAAAATTAATCAAAATCT
AGGAATTCCTACAGACATTCTTGTAAAAGAATATAAAGTCAAAACTTCTAAGACAGGAAGAAAAAGAACGCCGTCCGTGG
CGTAA

Upstream 100 bases:

>100_bases
CAGATTGATTGTGAAGGTTCACTATAATCTACAAACTGTATTTATAAGGTTTATCGGTACTCACGAACAATATGACAAAA
TCAACGCTGAGGTGATTTAA

Downstream 100 bases:

>100_bases
TTACTTCTTTAAGCCCGAAAACTTCGCATAACAGCGACTTACCGCTTCGCATCGGGACTTCGCCCTCGCTCGGCCTGCGG
CAAATTTCTCTCCGTCACGC

Product: transcription regulator

Products: NA

Alternate protein names: Transcription Regulator With HTH Domain; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator; XRE Family Transcriptional Regulator; Transcription Regulator; Transcription Regulator With HTH Domain Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Xre Family; Transcription Regulator Containing HTH Domain; Transcription Regulator Protein; Transcritional Regulatior Protein; Transcription Regulator Containing Helix Turn Helix Domain; HTH_3 Family Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator YgjM; Transcriptional Regulator Protein; Transcription Regulator With HTH Domain-Containing Protein

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MNIKPIKNQKDHLDALSEIEKLWDAKKNTPEYDKLDILITLVDAYETKHYPIDDPDPIEALKSVMDDMNMKSVDLGNLIG
GRSRATEILNRKRKLTLEMIRKINQNLGIPTDILVKEYKVKTSKTGRKRTPSVA

Sequences:

>Translated_134_residues
MNIKPIKNQKDHLDALSEIEKLWDAKKNTPEYDKLDILITLVDAYETKHYPIDDPDPIEALKSVMDDMNMKSVDLGNLIG
GRSRATEILNRKRKLTLEMIRKINQNLGIPTDILVKEYKVKTSKTGRKRTPSVA
>Mature_134_residues
MNIKPIKNQKDHLDALSEIEKLWDAKKNTPEYDKLDILITLVDAYETKHYPIDDPDPIEALKSVMDDMNMKSVDLGNLIG
GRSRATEILNRKRKLTLEMIRKINQNLGIPTDILVKEYKVKTSKTGRKRTPSVA

Specific function: Unknown

COG id: COG5499

COG function: function code K; Predicted transcription regulator containing HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15360; Mature: 15360

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKPIKNQKDHLDALSEIEKLWDAKKNTPEYDKLDILITLVDAYETKHYPIDDPDPIEA
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
LKSVMDDMNMKSVDLGNLIGGRSRATEILNRKRKLTLEMIRKINQNLGIPTDILVKEYKV
HHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KTSKTGRKRTPSVA
CCCCCCCCCCCCCC
>Mature Secondary Structure
MNIKPIKNQKDHLDALSEIEKLWDAKKNTPEYDKLDILITLVDAYETKHYPIDDPDPIEA
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
LKSVMDDMNMKSVDLGNLIGGRSRATEILNRKRKLTLEMIRKINQNLGIPTDILVKEYKV
HHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KTSKTGRKRTPSVA
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA