BacMap

Definition	Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence.
Accession	NC_010602
Length	3,599,677

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The map label for this gene is yliA [C]

Identifier: 183221009

GI number: 183221009

Start: 1695456

End: 1696061

Strand: Direct

Name: yliA [C]

Synonym: LEPBI_I1622

Alternate gene names: 183221009

Gene position: 1695456-1696061 (Clockwise)

Preceding gene: 183221008

Following gene: 183221010

Centisome position: 47.1

GC content: 39.77

Gene sequence:

>606_bases
ATGGCATTATTTTCCATCATCCCAGAAGGCGCAAGGTTGACTTATGATCAGTTTTTGGTTTTGGGTGATGATGTGTTTTC
AAAGAACGTTCCGAATCAAAAGAATGTCTTCCTTGTCCCTCAAAATCCTAATTTAGCCTTTCATCCCTACCGAACCATAG
AGAGCCAAATCAAAGATTTTTTAAGGCTGTCTTCTTTATCCCATATCACCTTGGAAACTGTTTTTTCTTACTTTGATCAA
TTGAAGATCCCGCGAGGGCATTGGAAACAATTTGCAAAGAACCTTTCGGGAGGGGAAAAGCAGAGAATTTTACTCACTCT
TGCTTTCCTACGCCATCCAAAAATTTTGATTTTAGATGAGCCAACCACGGGACTCGATGCGTTTTCTGAAAAAATTGTCC
TAGAAACGGTTCAAAAATTAGCAAAATCGGGGATGACAGTTGTTTTTATTACACACGAACTGAGGATCGTCGCAAGTCTG
GCTTCCGAAGTTACGATAATGAAAGAAGGGGAAGTCGTAGAATCGCTTCCAATTCGAAACCACCAATTGGAGCCTATTTC
AGGATATGGAAAACAACTTAAGGAAGCCTCTCTTTTATTTTCGTAA

Upstream 100 bases:

>100_bases
AGAAGGGCATTTCATTTGGAAATCCATTGGACTTCAAGTCAAAAAAGGTAGCATTCATGGTGTCATTGGGGAATCAGGGT
CGGGGAAATCCACACTGGCG

Downstream 100 bases:

>100_bases
TTGGTTTTTCCTTTGGATTTGTTTTTTCACGTTTCCCATTTTTTCAGAGTCCCCCATATCATTACGATCCATCGATGTAA
GTTCCTATCCAGAAGTAAAA

Product: putative dipeptide/oligopeptide/nickel ABC transporter ATP binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MALFSIIPEGARLTYDQFLVLGDDVFSKNVPNQKNVFLVPQNPNLAFHPYRTIESQIKDFLRLSSLSHITLETVFSYFDQ
LKIPRGHWKQFAKNLSGGEKQRILLTLAFLRHPKILILDEPTTGLDAFSEKIVLETVQKLAKSGMTVVFITHELRIVASL
ASEVTIMKEGEVVESLPIRNHQLEPISGYGKQLKEASLLFS

Sequences:

>Translated_201_residues
MALFSIIPEGARLTYDQFLVLGDDVFSKNVPNQKNVFLVPQNPNLAFHPYRTIESQIKDFLRLSSLSHITLETVFSYFDQ
LKIPRGHWKQFAKNLSGGEKQRILLTLAFLRHPKILILDEPTTGLDAFSEKIVLETVQKLAKSGMTVVFITHELRIVASL
ASEVTIMKEGEVVESLPIRNHQLEPISGYGKQLKEASLLFS
>Mature_200_residues
ALFSIIPEGARLTYDQFLVLGDDVFSKNVPNQKNVFLVPQNPNLAFHPYRTIESQIKDFLRLSSLSHITLETVFSYFDQL
KIPRGHWKQFAKNLSGGEKQRILLTLAFLRHPKILILDEPTTGLDAFSEKIVLETVQKLAKSGMTVVFITHELRIVASLA
SEVTIMKEGEVVESLPIRNHQLEPISGYGKQLKEASLLFS

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=156, Percent_Identity=30.1282051282051, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI171184400, Length=80, Percent_Identity=43.75, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI9961252, Length=80, Percent_Identity=43.75, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9961250, Length=80, Percent_Identity=43.75, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI4505771, Length=80, Percent_Identity=43.75, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI156105685, Length=81, Percent_Identity=43.2098765432099, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI42741659, Length=80, Percent_Identity=43.75, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI145693107, Length=165, Percent_Identity=32.1212121212121, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787759, Length=186, Percent_Identity=30.1075268817204, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788506, Length=144, Percent_Identity=31.9444444444444, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI48994883, Length=154, Percent_Identity=29.8701298701299, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1789672, Length=98, Percent_Identity=38.7755102040816, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789963, Length=185, Percent_Identity=27.5675675675676, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789962, Length=171, Percent_Identity=29.2397660818713, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789890, Length=175, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786319, Length=164, Percent_Identity=30.4878048780488, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786872, Length=92, Percent_Identity=36.9565217391304, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786398, Length=85, Percent_Identity=35.2941176470588, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI87081791, Length=147, Percent_Identity=29.9319727891156, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787089, Length=144, Percent_Identity=29.8611111111111, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994997, Length=104, Percent_Identity=32.6923076923077, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787029, Length=91, Percent_Identity=36.2637362637363, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789891, Length=169, Percent_Identity=28.4023668639053, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788225, Length=89, Percent_Identity=33.7078651685393, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1789991, Length=127, Percent_Identity=32.2834645669291, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786563, Length=139, Percent_Identity=28.7769784172662, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788644, Length=103, Percent_Identity=31.0679611650485, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787792, Length=146, Percent_Identity=30.1369863013699, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI48995001, Length=107, Percent_Identity=31.7757009345794, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI87081709, Length=159, Percent_Identity=23.2704402515723, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1788210, Length=88, Percent_Identity=32.9545454545455, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1790190, Length=110, Percent_Identity=29.0909090909091, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1787500, Length=86, Percent_Identity=33.7209302325581, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=202, Percent_Identity=29.7029702970297, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17569145, Length=147, Percent_Identity=37.4149659863946, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=200, Percent_Identity=32, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=170, Percent_Identity=30, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=139, Percent_Identity=30.9352517985612, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=108, Percent_Identity=39.8148148148148, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=108, Percent_Identity=39.8148148148148, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=108, Percent_Identity=39.8148148148148, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17569143, Length=146, Percent_Identity=32.8767123287671, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=80, Percent_Identity=46.25, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=162, Percent_Identity=32.0987654320988, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=80, Percent_Identity=42.5, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=88, Percent_Identity=40.9090909090909, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=104, Percent_Identity=35.5769230769231, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=189, Percent_Identity=30.6878306878307, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=84, Percent_Identity=42.8571428571429, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17511077, Length=109, Percent_Identity=37.6146788990826, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=86, Percent_Identity=43.0232558139535, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6324498, Length=90, Percent_Identity=41.1111111111111, Blast_Score=67, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324985, Length=104, Percent_Identity=37.5, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281363262, Length=94, Percent_Identity=44.6808510638298, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24653245, Length=94, Percent_Identity=44.6808510638298, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85726357, Length=97, Percent_Identity=39.1752577319588, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17136662, Length=97, Percent_Identity=39.1752577319588, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24659289, Length=80, Percent_Identity=42.5, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397593, Length=80, Percent_Identity=41.25, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 22736; Mature: 22605

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFSIIPEGARLTYDQFLVLGDDVFSKNVPNQKNVFLVPQNPNLAFHPYRTIESQIKDF
CCHHHCCCCCCEECHHHEEEECCHHHHCCCCCCCCEEEEECCCCEEECCHHHHHHHHHHH
LRLSSLSHITLETVFSYFDQLKIPRGHWKQFAKNLSGGEKQRILLTLAFLRHPKILILDE
HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEEC
PTTGLDAFSEKIVLETVQKLAKSGMTVVFITHELRIVASLASEVTIMKEGEVVESLPIRN
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHEEEEECCCHHHHCCCCC
HQLEPISGYGKQLKEASLLFS
CCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALFSIIPEGARLTYDQFLVLGDDVFSKNVPNQKNVFLVPQNPNLAFHPYRTIESQIKDF
CHHHCCCCCCEECHHHEEEECCHHHHCCCCCCCCEEEEECCCCEEECCHHHHHHHHHHH
LRLSSLSHITLETVFSYFDQLKIPRGHWKQFAKNLSGGEKQRILLTLAFLRHPKILILDE
HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEEC
PTTGLDAFSEKIVLETVQKLAKSGMTVVFITHELRIVASLASEVTIMKEGEVVESLPIRN
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHEEEEECCCHHHHCCCCC
HQLEPISGYGKQLKEASLLFS
CCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA