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The map label for this gene is ybbD [H]

Identifier: 183220365

GI number: 183220365

Start: 993827

End: 995593

Strand: Reverse

Name: ybbD [H]

Synonym: LEPBI_I0961

Alternate gene names: 183220365

Gene position: 995593-993827 (Counterclockwise)

Preceding gene: 183220367

Following gene: 183220363

Centisome position: 27.66

GC content: 40.8

Gene sequence:

>1767_bases
ATGAACCAAGTTCTCCTTCGTACCACCTTTTCCCTTTTCCTTTTATTCGGATTTTTTGGATCGTCCTATTGTTTCGGATT
TTACCTCACCGAACTTGCCGCCAACGAACGAAAGGTTTGGTTGGATGAAAAAGCATGGTCCATCACCAATGCAATGACAG
AGGAGGAACTAGTTGGACAAACCATCCACATCGCCATCCCTTCGAAGACAGTTGACCAAATTGCCCTCGATGAAATCAAA
CAAACAAAACCTGGTGGCATCATCCTCTTTGGAAAAAACTTAGGGAAAAAAGAAGAAATCCTCTCTCTCACAGAAAACCT
ACAACGTTCCGCAAAAGAAAATGGCCTCCCCCCATTTCTCATCTCCACTGACCAAGAAGGAGGACGCGTGTTTCGAGTCC
AAGATGGAATCACTCATTATCCTGGTGCCATGGCTGTGGGCCAAACTGGAAAAAAAGAATGGGGTGAGATTGTTGGGTTT
GTGACTTCTTATGAATTAAGAAGCCTTGGCCTCAATTTTTTATTTGCACCAGTTCTCGATATCAATAACAACCCTCTCAA
CCCAGTCATTAACACACGTTCGTTTGGATCAGATGTCCATCGTGTTTCTGACGTTGCCGTTGCCTATGAGCGAGGTGCAC
GGGCTGGTGGTTGTTTGCCTGTGATCAAACATTTCCCAGGGCATGGAGACACAACTGTGGATAGTCACTTGGGCCTTCCG
ATCATTAATAAAAGTTTAACCGAATTAGAAAAACTGGAACTGGTTCCGTTCCAAGAGTCCATCCGTGGTGGCGCGGAAGC
TGTGATGTCGGCTCATATCGTATATCCAAAAATTGATCCTAATTTCCCAGCCACACTTTCCAAAACGATTCTAACAGATG
TTTTACGAAAGTCATTACAGTTTGATGGAATCATCATTACGGATGCGATGGAGATGCATGCCATCTCTAAAAATTATGAA
AAGGATCGTCCAGGAGTTCTCACCATCCTCGCAGGTGCCAATATCGTTTTACTCACCAGTTGGGGAGAAACCGCCAAAAA
GTTCAAAGCACAACTCATGGATGCTTACAAAAATGGGGAATTTGAATTTGTGGACAAAGAAGGAAAAAAACACGATCTAC
TAAAAGAAGCAGTCCAAAAACAAATTCGAAAAAAATTAGAACTTGGGATTTATGATAAAAATTCCATCCTACCGAATGTT
TATGACGAAAACCAAAAACAAAAAGAATTCCTTTTGGCATGGGAAAAAGAAAGGAACGAACGATACAAAAAATTAAGTGA
GTCTCAAAACTTTGCCAAAGAAATCAATGAAGACTCCATACGAGCTTATCCAAAATCAGTTGTGACTGCAACCATTGTTC
CCGAACAAACGGTTTCCTTTGTCAAAAACCCAAGACTCAAAGAGTTTTTAAAATCCAAAAAGATCCAATCTGCCTCTTCT
AAATCATTTTCAAGTTTTACGAAACAAAAGAATTTCACAACGTATCTGTTTGATTCCACCTCAGAAGCAGAGGTAAAAAT
GGTTGTTGGACTTGCAAAAAAATTCCCAAACAAACGATTCCTTGTGATGCACGGAGGAACTCCCTTCATCCAATTGCCGG
AACTTAAGAACTTAGAGTATCTATTGTCATTTTCGTTAACTGTTGGATCTTGGGAAGCTATGGGTTCCAAACTTACCTCA
GGAAAAGAAATCCCCAAGGTAGATTTGATTTTATTATCAAAAGAAGCAAAAACACCATCCAAAGGTGCTTTCCCCGAAAG
TTTATAA

Upstream 100 bases:

>100_bases
ATCATCCACTAATGACTCAGACGATACAAACCCAAAACAAGTCTCATATTTTTCGTAGTTGTCTTAGAAAAGCACCTCCT
AAATCCTACATCCATAGTCT

Downstream 100 bases:

>100_bases
GATGTAAGAGAGGATTATGTTAACACCTCTCTTACTCCTCCACGTTTGCGGATTTCTTCATACAAAGATTTCCGCATCTC
CTCATCGGCATCGACATATC

Product: putative beta-N-acetylhexosaminidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 588; Mature: 588

Protein sequence:

>588_residues
MNQVLLRTTFSLFLLFGFFGSSYCFGFYLTELAANERKVWLDEKAWSITNAMTEEELVGQTIHIAIPSKTVDQIALDEIK
QTKPGGIILFGKNLGKKEEILSLTENLQRSAKENGLPPFLISTDQEGGRVFRVQDGITHYPGAMAVGQTGKKEWGEIVGF
VTSYELRSLGLNFLFAPVLDINNNPLNPVINTRSFGSDVHRVSDVAVAYERGARAGGCLPVIKHFPGHGDTTVDSHLGLP
IINKSLTELEKLELVPFQESIRGGAEAVMSAHIVYPKIDPNFPATLSKTILTDVLRKSLQFDGIIITDAMEMHAISKNYE
KDRPGVLTILAGANIVLLTSWGETAKKFKAQLMDAYKNGEFEFVDKEGKKHDLLKEAVQKQIRKKLELGIYDKNSILPNV
YDENQKQKEFLLAWEKERNERYKKLSESQNFAKEINEDSIRAYPKSVVTATIVPEQTVSFVKNPRLKEFLKSKKIQSASS
KSFSSFTKQKNFTTYLFDSTSEAEVKMVVGLAKKFPNKRFLVMHGGTPFIQLPELKNLEYLLSFSLTVGSWEAMGSKLTS
GKEIPKVDLILLSKEAKTPSKGAFPESL

Sequences:

>Translated_588_residues
MNQVLLRTTFSLFLLFGFFGSSYCFGFYLTELAANERKVWLDEKAWSITNAMTEEELVGQTIHIAIPSKTVDQIALDEIK
QTKPGGIILFGKNLGKKEEILSLTENLQRSAKENGLPPFLISTDQEGGRVFRVQDGITHYPGAMAVGQTGKKEWGEIVGF
VTSYELRSLGLNFLFAPVLDINNNPLNPVINTRSFGSDVHRVSDVAVAYERGARAGGCLPVIKHFPGHGDTTVDSHLGLP
IINKSLTELEKLELVPFQESIRGGAEAVMSAHIVYPKIDPNFPATLSKTILTDVLRKSLQFDGIIITDAMEMHAISKNYE
KDRPGVLTILAGANIVLLTSWGETAKKFKAQLMDAYKNGEFEFVDKEGKKHDLLKEAVQKQIRKKLELGIYDKNSILPNV
YDENQKQKEFLLAWEKERNERYKKLSESQNFAKEINEDSIRAYPKSVVTATIVPEQTVSFVKNPRLKEFLKSKKIQSASS
KSFSSFTKQKNFTTYLFDSTSEAEVKMVVGLAKKFPNKRFLVMHGGTPFIQLPELKNLEYLLSFSLTVGSWEAMGSKLTS
GKEIPKVDLILLSKEAKTPSKGAFPESL
>Mature_588_residues
MNQVLLRTTFSLFLLFGFFGSSYCFGFYLTELAANERKVWLDEKAWSITNAMTEEELVGQTIHIAIPSKTVDQIALDEIK
QTKPGGIILFGKNLGKKEEILSLTENLQRSAKENGLPPFLISTDQEGGRVFRVQDGITHYPGAMAVGQTGKKEWGEIVGF
VTSYELRSLGLNFLFAPVLDINNNPLNPVINTRSFGSDVHRVSDVAVAYERGARAGGCLPVIKHFPGHGDTTVDSHLGLP
IINKSLTELEKLELVPFQESIRGGAEAVMSAHIVYPKIDPNFPATLSKTILTDVLRKSLQFDGIIITDAMEMHAISKNYE
KDRPGVLTILAGANIVLLTSWGETAKKFKAQLMDAYKNGEFEFVDKEGKKHDLLKEAVQKQIRKKLELGIYDKNSILPNV
YDENQKQKEFLLAWEKERNERYKKLSESQNFAKEINEDSIRAYPKSVVTATIVPEQTVSFVKNPRLKEFLKSKKIQSASS
KSFSSFTKQKNFTTYLFDSTSEAEVKMVVGLAKKFPNKRFLVMHGGTPFIQLPELKNLEYLLSFSLTVGSWEAMGSKLTS
GKEIPKVDLILLSKEAKTPSKGAFPESL

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=263, Percent_Identity=32.6996197718631, Blast_Score=133, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 65723; Mature: 65723

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQVLLRTTFSLFLLFGFFGSSYCFGFYLTELAANERKVWLDEKAWSITNAMTEEELVGQ
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCC
TIHIAIPSKTVDQIALDEIKQTKPGGIILFGKNLGKKEEILSLTENLQRSAKENGLPPFL
EEEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
ISTDQEGGRVFRVQDGITHYPGAMAVGQTGKKEWGEIVGFVTSYELRSLGLNFLFAPVLD
EECCCCCCEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
INNNPLNPVINTRSFGSDVHRVSDVAVAYERGARAGGCLPVIKHFPGHGDTTVDSHLGLP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
IINKSLTELEKLELVPFQESIRGGAEAVMSAHIVYPKIDPNFPATLSKTILTDVLRKSLQ
HHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHC
FDGIIITDAMEMHAISKNYEKDRPGVLTILAGANIVLLTSWGETAKKFKAQLMDAYKNGE
CCCEEEECHHHHHHHHHCCCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCC
FEFVDKEGKKHDLLKEAVQKQIRKKLELGIYDKNSILPNVYDENQKQKEFLLAWEKERNE
EEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RYKKLSESQNFAKEINEDSIRAYPKSVVTATIVPEQTVSFVKNPRLKEFLKSKKIQSASS
HHHHHHHHHHHHHHCCCCHHHHCCCHHEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHCC
KSFSSFTKQKNFTTYLFDSTSEAEVKMVVGLAKKFPNKRFLVMHGGTPFIQLPELKNLEY
HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCEE
LLSFSLTVGSWEAMGSKLTSGKEIPKVDLILLSKEAKTPSKGAFPESL
EEEEEEECCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MNQVLLRTTFSLFLLFGFFGSSYCFGFYLTELAANERKVWLDEKAWSITNAMTEEELVGQ
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCC
TIHIAIPSKTVDQIALDEIKQTKPGGIILFGKNLGKKEEILSLTENLQRSAKENGLPPFL
EEEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
ISTDQEGGRVFRVQDGITHYPGAMAVGQTGKKEWGEIVGFVTSYELRSLGLNFLFAPVLD
EECCCCCCEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
INNNPLNPVINTRSFGSDVHRVSDVAVAYERGARAGGCLPVIKHFPGHGDTTVDSHLGLP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
IINKSLTELEKLELVPFQESIRGGAEAVMSAHIVYPKIDPNFPATLSKTILTDVLRKSLQ
HHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHC
FDGIIITDAMEMHAISKNYEKDRPGVLTILAGANIVLLTSWGETAKKFKAQLMDAYKNGE
CCCEEEECHHHHHHHHHCCCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCC
FEFVDKEGKKHDLLKEAVQKQIRKKLELGIYDKNSILPNVYDENQKQKEFLLAWEKERNE
EEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RYKKLSESQNFAKEINEDSIRAYPKSVVTATIVPEQTVSFVKNPRLKEFLKSKKIQSASS
HHHHHHHHHHHHHHCCCCHHHHCCCHHEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHCC
KSFSSFTKQKNFTTYLFDSTSEAEVKMVVGLAKKFPNKRFLVMHGGTPFIQLPELKNLEY
HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCEE
LLSFSLTVGSWEAMGSKLTSGKEIPKVDLILLSKEAKTPSKGAFPESL
EEEEEEECCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]