Click here to switch to the map view.

The map label for this gene is epsD [H]

Identifier: 183220087

GI number: 183220087

Start: 680492

End: 681598

Strand: Reverse

Name: epsD [H]

Synonym: LEPBI_I0675

Alternate gene names: 183220087

Gene position: 681598-680492 (Counterclockwise)

Preceding gene: 183220088

Following gene: 183220086

Centisome position: 18.93

GC content: 38.66

Gene sequence:

>1107_bases
TTGATCTTACATATCAACACATCTCGCGAATGGCGCGGTGGCGAACAACAGCTTTATTATCTCGTACAAGGTTTAGCCAA
TTACAAAATTCCACAAATGGTTGTTGGCCAACCTGGTTCTCCCTTAGAAACAAAATGTAAGGACAATGGGTATACTTTTT
ATCCCATTGAGATGCGAGGTGAATGGGATAGAAAAGCATATAAGAATATTCGATCTCTCTGTTTATCCAACAATATCAAA
CTCATCCACACTCACACGGCCCATGCGCATACCCTAGCCTTACTAGCCAAACGAAACCATCTCAAAATCCCGTTGATCGT
TTCTAGAAGGGTTGATTTTAAACCCAAAAATAGTTTTTTTTCAAGATGGAAATACCAACACCCAGCTAACGATTATTACC
TGCCAGTCTCACAAAAAATCAAAGAAGTGATGATGAGCAGTAAAATTGCACCAGAAAGGATCATCACTGTTTATTCCGGA
ATTGATTTGAAACGATTCACGAAACAAACTCCGCACGAATACTTACGTGAGGAATTCAACATTCCGAAGAAAGCTGTGGT
GATTGGAAATGTGGCGGCACTTGTGGATCACAAAGACCAAGAAACATTGATCTCTGCCATCTCCAAGATGAAAACAAATA
TTGATTTCCGACTCATGATAGTTGGGGAAGGGAAATTAGAAAAAAAACTAAAAAGCCAAGCGGAAGGTTTAAACCTAAAC
GATAAAATTATATTTACAGGTTACAGAAAAGACATTCCCGCCTTACTTTCTTTATTCGATATTTTCACACTCACTTCCAA
AGAAGAAGGCCTTGGGACAGCAGTACTTGATGCAATGGCCTGTTCCTTACCAATTGTTGCGACCAATGGTGGTGGCATTG
GAGAGATGTTAGACCATAATGAAGGTGCGTTTGTATGCCCTGTGGGTGATTCAGAATCCATTGCATTAGGACTTGATAAA
CTGGTTTCGTCTGAAGAACTACGAAATCAATTTGGTAATTTTAATAAAACATCTGTGAAACGATTTTCAGTTACCAAAAC
AATCGATAAAACCAAACTCATCTATTATTCCTTTTTAGGTGATTCATTGTATGGAGAAGGGAAATGA

Upstream 100 bases:

>100_bases
ATGTTTCACGGAGAAGGAATGGTAGACGAAGCTCCGGCGGGGTTCAAAGTAATGGGCTCCATCATCGCACTCGAATACGA
CCGTTCCAAACACTTATAAT

Downstream 100 bases:

>100_bases
GTGGAAGACTTTTAATCATTGATGGACATGCCCTTGCATTCCGAGCTTATTTTGCCTTTGCCGCTTCTAATTTAACCAAT
TCCAAAACAGGTCTTCCTAG

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MILHINTSREWRGGEQQLYYLVQGLANYKIPQMVVGQPGSPLETKCKDNGYTFYPIEMRGEWDRKAYKNIRSLCLSNNIK
LIHTHTAHAHTLALLAKRNHLKIPLIVSRRVDFKPKNSFFSRWKYQHPANDYYLPVSQKIKEVMMSSKIAPERIITVYSG
IDLKRFTKQTPHEYLREEFNIPKKAVVIGNVAALVDHKDQETLISAISKMKTNIDFRLMIVGEGKLEKKLKSQAEGLNLN
DKIIFTGYRKDIPALLSLFDIFTLTSKEEGLGTAVLDAMACSLPIVATNGGGIGEMLDHNEGAFVCPVGDSESIALGLDK
LVSSEELRNQFGNFNKTSVKRFSVTKTIDKTKLIYYSFLGDSLYGEGK

Sequences:

>Translated_368_residues
MILHINTSREWRGGEQQLYYLVQGLANYKIPQMVVGQPGSPLETKCKDNGYTFYPIEMRGEWDRKAYKNIRSLCLSNNIK
LIHTHTAHAHTLALLAKRNHLKIPLIVSRRVDFKPKNSFFSRWKYQHPANDYYLPVSQKIKEVMMSSKIAPERIITVYSG
IDLKRFTKQTPHEYLREEFNIPKKAVVIGNVAALVDHKDQETLISAISKMKTNIDFRLMIVGEGKLEKKLKSQAEGLNLN
DKIIFTGYRKDIPALLSLFDIFTLTSKEEGLGTAVLDAMACSLPIVATNGGGIGEMLDHNEGAFVCPVGDSESIALGLDK
LVSSEELRNQFGNFNKTSVKRFSVTKTIDKTKLIYYSFLGDSLYGEGK
>Mature_368_residues
MILHINTSREWRGGEQQLYYLVQGLANYKIPQMVVGQPGSPLETKCKDNGYTFYPIEMRGEWDRKAYKNIRSLCLSNNIK
LIHTHTAHAHTLALLAKRNHLKIPLIVSRRVDFKPKNSFFSRWKYQHPANDYYLPVSQKIKEVMMSSKIAPERIITVYSG
IDLKRFTKQTPHEYLREEFNIPKKAVVIGNVAALVDHKDQETLISAISKMKTNIDFRLMIVGEGKLEKKLKSQAEGLNLN
DKIIFTGYRKDIPALLSLFDIFTLTSKEEGLGTAVLDAMACSLPIVATNGGGIGEMLDHNEGAFVCPVGDSESIALGLDK
LVSSEELRNQFGNFNKTSVKRFSVTKTIDKTKLIYYSFLGDSLYGEGK

Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles. Required for biofilm maintenance [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Escherichia coli, GI1788357, Length=190, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 41585; Mature: 41585

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILHINTSREWRGGEQQLYYLVQGLANYKIPQMVVGQPGSPLETKCKDNGYTFYPIEMRG
CEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECC
EWDRKAYKNIRSLCLSNNIKLIHTHTAHAHTLALLAKRNHLKIPLIVSRRVDFKPKNSFF
CCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHH
SRWKYQHPANDYYLPVSQKIKEVMMSSKIAPERIITVYSGIDLKRFTKQTPHEYLREEFN
HHCCCCCCCCCEEECHHHHHHHHHHHCCCCCHHEEEEECCCCHHHHHHCCHHHHHHHHHC
IPKKAVVIGNVAALVDHKDQETLISAISKMKTNIDFRLMIVGEGKLEKKLKSQAEGLNLN
CCCEEEEEECEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCC
DKIIFTGYRKDIPALLSLFDIFTLTSKEEGLGTAVLDAMACSLPIVATNGGGIGEMLDHN
CEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHCCC
EGAFVCPVGDSESIALGLDKLVSSEELRNQFGNFNKTSVKRFSVTKTIDKTKLIYYSFLG
CCEEEEECCCCCCEEHHHHHHHCHHHHHHHHCCCCCCCEEEEEEEHHCCCCEEEEEEECC
DSLYGEGK
CCCCCCCC
>Mature Secondary Structure
MILHINTSREWRGGEQQLYYLVQGLANYKIPQMVVGQPGSPLETKCKDNGYTFYPIEMRG
CEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECC
EWDRKAYKNIRSLCLSNNIKLIHTHTAHAHTLALLAKRNHLKIPLIVSRRVDFKPKNSFF
CCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHH
SRWKYQHPANDYYLPVSQKIKEVMMSSKIAPERIITVYSGIDLKRFTKQTPHEYLREEFN
HHCCCCCCCCCEEECHHHHHHHHHHHCCCCCHHEEEEECCCCHHHHHHCCHHHHHHHHHC
IPKKAVVIGNVAALVDHKDQETLISAISKMKTNIDFRLMIVGEGKLEKKLKSQAEGLNLN
CCCEEEEEECEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCC
DKIIFTGYRKDIPALLSLFDIFTLTSKEEGLGTAVLDAMACSLPIVATNGGGIGEMLDHN
CEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHCCC
EGAFVCPVGDSESIALGLDKLVSSEELRNQFGNFNKTSVKRFSVTKTIDKTKLIYYSFLG
CCEEEEECCCCCCEEHHHHHHHCHHHHHHHHCCCCCCCEEEEEEEHHCCCCEEEEEEECC
DSLYGEGK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]