| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
Click here to switch to the map view.
The map label for this gene is yusZ [H]
Identifier: 183219533
GI number: 183219533
Start: 107324
End: 108154
Strand: Direct
Name: yusZ [H]
Synonym: LEPBI_I0106
Alternate gene names: 183219533
Gene position: 107324-108154 (Clockwise)
Preceding gene: 183219532
Following gene: 183219534
Centisome position: 2.98
GC content: 34.66
Gene sequence:
>831_bases ATGAGTAAGGTAATTGTAATTAGCGGAATTGCCCAAGGTATGGGTCGGGAAGTGTCATTGATGTTGGCATCACAAGGATA TACTATTTGTGGATTTGATATTGAGAAAAAATATTTAGATAGTTTAGCAGATGAGTTAAATCAATTGAAGGCTAAGTTTC ATCTCGAAACTTTAAGTGTTACTGATTCTGACAAAATTTTAAAATTTAAAGACACAGTATTAAAAAAGTTTGGATCAGTG GATACAGTTGTTTCTAATGTTGGGATTGGTTTTTTTGGCCCGTTTGAAGAAGTCAATTTAGTAAAAGCATTACAGTGTTT CGATATCAATGTTATTGGATGTGCAAGACTTTTACAGGCATTCATCCCTTCGATGCGTGAGAGAAAAAGTGGAAAGATAG TTGTGATGTCATCACTTGTCGGCCAAGTTCCATTTCCTTTCGAATCAATTTATTCGGCGACTAAGTTTGCCATCGAAGGT ATGGTTTCATCATTTCGATATGAAGTGAAACCATTTGGAATTCAAGTCGCGATGATCCAACCGGCACAGGTATCCACAAA TTTTGCTGCCAAAGCGCAACAGTTACCTGATAAAAATTCACCTTACTATGATCGATGTGTTCGATTTATTAACCGTGATA ATGAATTAATTAAAAAGGCAACGAATCCAAAACAAGCTGCAGAAAAAATCGTGAAAGTGATACAGTCAAAGAATCCAAAC TTATTCAATCAGGTAGATTTCATGAGTAGTTTCTTTTTGGGTTTGAATCGTTTTTTGCCTCAAAAATTAAAAGATAAAAT TCTACTCGATCACATGAATATCAATGTATAG
Upstream 100 bases:
>100_bases TATATGGATAATGAGAAACTAAAATCAACTGGTTACAAGTTACTGTATCCAAATTTTGTTTCTTCAATGGAATCAATGAA ATTAATTTAAAGAGGATAAA
Downstream 100 bases:
>100_bases GAAGAAGAATGAAAGTTCCGAGTCTCAGTAAATTGACAATATTTCACTTGCTCCAAGAAGGAAGACGTCTTTACGGCGAT CTTCCTGTGCAAAGTTTTAA
Product: putative short chain dehydrogenase
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MSKVIVISGIAQGMGREVSLMLASQGYTICGFDIEKKYLDSLADELNQLKAKFHLETLSVTDSDKILKFKDTVLKKFGSV DTVVSNVGIGFFGPFEEVNLVKALQCFDINVIGCARLLQAFIPSMRERKSGKIVVMSSLVGQVPFPFESIYSATKFAIEG MVSSFRYEVKPFGIQVAMIQPAQVSTNFAAKAQQLPDKNSPYYDRCVRFINRDNELIKKATNPKQAAEKIVKVIQSKNPN LFNQVDFMSSFFLGLNRFLPQKLKDKILLDHMNINV
Sequences:
>Translated_276_residues MSKVIVISGIAQGMGREVSLMLASQGYTICGFDIEKKYLDSLADELNQLKAKFHLETLSVTDSDKILKFKDTVLKKFGSV DTVVSNVGIGFFGPFEEVNLVKALQCFDINVIGCARLLQAFIPSMRERKSGKIVVMSSLVGQVPFPFESIYSATKFAIEG MVSSFRYEVKPFGIQVAMIQPAQVSTNFAAKAQQLPDKNSPYYDRCVRFINRDNELIKKATNPKQAAEKIVKVIQSKNPN LFNQVDFMSSFFLGLNRFLPQKLKDKILLDHMNINV >Mature_275_residues SKVIVISGIAQGMGREVSLMLASQGYTICGFDIEKKYLDSLADELNQLKAKFHLETLSVTDSDKILKFKDTVLKKFGSVD TVVSNVGIGFFGPFEEVNLVKALQCFDINVIGCARLLQAFIPSMRERKSGKIVVMSSLVGQVPFPFESIYSATKFAIEGM VSSFRYEVKPFGIQVAMIQPAQVSTNFAAKAQQLPDKNSPYYDRCVRFINRDNELIKKATNPKQAAEKIVKVIQSKNPNL FNQVDFMSSFFLGLNRFLPQKLKDKILLDHMNINV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI223718074, Length=269, Percent_Identity=28.996282527881, Blast_Score=123, Evalue=2e-28, Organism=Homo sapiens, GI7657478, Length=262, Percent_Identity=30.1526717557252, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI20149619, Length=197, Percent_Identity=31.4720812182741, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=25.6544502617801, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI4503817, Length=270, Percent_Identity=27.4074074074074, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI157739938, Length=248, Percent_Identity=24.1935483870968, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI44680136, Length=300, Percent_Identity=23.3333333333333, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI44680133, Length=300, Percent_Identity=23.3333333333333, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI17738292, Length=300, Percent_Identity=23.3333333333333, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI142976729, Length=189, Percent_Identity=25.3968253968254, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI7706318, Length=224, Percent_Identity=26.7857142857143, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI32483357, Length=195, Percent_Identity=28.2051282051282, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI7705855, Length=205, Percent_Identity=29.2682926829268, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI19743808, Length=286, Percent_Identity=23.4265734265734, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI119392083, Length=192, Percent_Identity=26.5625, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI32455239, Length=197, Percent_Identity=26.9035532994924, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI5031765, Length=197, Percent_Identity=26.9035532994924, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI150247226, Length=210, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1786701, Length=274, Percent_Identity=25.5474452554745, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI87082100, Length=201, Percent_Identity=30.3482587064677, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1787335, Length=187, Percent_Identity=25.1336898395722, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786812, Length=187, Percent_Identity=22.9946524064171, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787526, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788459, Length=190, Percent_Identity=22.6315789473684, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787905, Length=141, Percent_Identity=24.822695035461, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567345, Length=177, Percent_Identity=27.1186440677966, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17508895, Length=188, Percent_Identity=26.5957446808511, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71994604, Length=205, Percent_Identity=24.8780487804878, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193210355, Length=193, Percent_Identity=26.4248704663212, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71997402, Length=268, Percent_Identity=22.3880597014925, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17570069, Length=268, Percent_Identity=22.3880597014925, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17557780, Length=192, Percent_Identity=25.5208333333333, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562910, Length=217, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17565030, Length=217, Percent_Identity=28.110599078341, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17559552, Length=209, Percent_Identity=27.7511961722488, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71994600, Length=195, Percent_Identity=26.1538461538462, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115534660, Length=183, Percent_Identity=25.6830601092896, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=29.7435897435897, Blast_Score=84, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6322067, Length=295, Percent_Identity=27.4576271186441, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=188, Percent_Identity=27.1276595744681, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI24640492, Length=258, Percent_Identity=27.906976744186, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI281364892, Length=235, Percent_Identity=27.6595744680851, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI21358495, Length=245, Percent_Identity=26.1224489795918, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24663911, Length=196, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24648944, Length=194, Percent_Identity=27.319587628866, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI21355631, Length=288, Percent_Identity=26.0416666666667, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007236, Length=196, Percent_Identity=28.0612244897959, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24643142, Length=201, Percent_Identity=28.8557213930348, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=28.021978021978, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24649181, Length=195, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=26.5957446808511, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24581726, Length=195, Percent_Identity=27.6923076923077, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI23397609, Length=187, Percent_Identity=26.2032085561497, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI21356301, Length=191, Percent_Identity=22.5130890052356, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI28571526, Length=207, Percent_Identity=25.6038647342995, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580925, Length=199, Percent_Identity=25.1256281407035, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI21357041, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24640442, Length=198, Percent_Identity=26.2626262626263, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24641232, Length=198, Percent_Identity=24.2424242424242, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30916; Mature: 30784
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVIVISGIAQGMGREVSLMLASQGYTICGFDIEKKYLDSLADELNQLKAKFHLETLSV CCCEEEEECHHHCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHEEEEE TDSDKILKFKDTVLKKFGSVDTVVSNVGIGFFGPFEEVNLVKALQCFDINVIGCARLLQA CCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH FIPSMRERKSGKIVVMSSLVGQVPFPFESIYSATKFAIEGMVSSFRYEVKPFGIQVAMIQ HHHHHHHCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEC PAQVSTNFAAKAQQLPDKNSPYYDRCVRFINRDNELIKKATNPKQAAEKIVKVIQSKNPN CCHHCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCCCCC LFNQVDFMSSFFLGLNRFLPQKLKDKILLDHMNINV HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC >Mature Secondary Structure SKVIVISGIAQGMGREVSLMLASQGYTICGFDIEKKYLDSLADELNQLKAKFHLETLSV CCEEEEECHHHCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHEEEEE TDSDKILKFKDTVLKKFGSVDTVVSNVGIGFFGPFEEVNLVKALQCFDINVIGCARLLQA CCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH FIPSMRERKSGKIVVMSSLVGQVPFPFESIYSATKFAIEGMVSSFRYEVKPFGIQVAMIQ HHHHHHHCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEC PAQVSTNFAAKAQQLPDKNSPYYDRCVRFINRDNELIKKATNPKQAAEKIVKVIQSKNPN CCHHCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCCCCC LFNQVDFMSSFFLGLNRFLPQKLKDKILLDHMNINV HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9384377; 8396117 [H]