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The map label for this gene is dgdR [H]

Identifier: 182677520

GI number: 182677520

Start: 580129

End: 581079

Strand: Direct

Name: dgdR [H]

Synonym: Bind_0525

Alternate gene names: 182677520

Gene position: 580129-581079 (Clockwise)

Preceding gene: 182677512

Following gene: 182677528

Centisome position: 13.91

GC content: 61.62

Gene sequence:

>951_bases
ATGCGCCTGACAAATCTCGACATGGATCTGTTGCGGACCCTATCCGTGGCCAGCGAACTCGGAGGACTGGGGCGCGCCGC
CGAACGTCTCGGGCGCTCGCCTTCTGCCATCAGCCTGCAGATGCACAAGCTGGAGGAACAGGTCGGCAAGACCTTGTTCC
GTAAACAAGGTCGCGGCATTTCTTTGACCGATGCCGGTGATCTCCTGCTCGGCTATGCGCGACGAATCCTGGCCCTGAAC
GACGAGGCCTTGGCCGCCACGCGGGGTGTCGGCGTCGAGGGGATCGTGCGGCTTGGCGTGCCTTTCGACCTCACTTCGGA
ATGGCTGCCGAAAGTGCTGGCGCGTTTCAGCGAAGCTTATCCGAGGGTCCATATCGAATTGCGGACCGATCGCAGCGTGG
AGCTTTTGCAGCTTTATAATCAGGATCTTCTGGATCTGACTTTAGCCTTTGGGCCGGTCGAGCGGCCCGGCGCCTCCTTC
GTGGCCGAAGTGCCGGTGCGCTGGATCGGCAGCACCGGATTTCGCCTCGACAAAAACCAGGACGTGCCCTTGATTCTGCT
CGATCCGCCATGCTGGTTCCGGCAAACTGGTATTGACGCGCTCGATCGCCACCAGACCGCCTGGCGTCTCGCCTTCACGA
GCCCGAGCCTTGCAGGCCTGTGGGCGGCGACAGAGGCCGGGCTTGGCATTACCGTGCGCACGCCGCTGGGCATGCCGCGC
TCCTTGAGCGCGCTTGATCCTGATCATGGTCTGCCCGATCTGCCCCGCGTCTCTATCGTCCTTTACAATAGTGCCAGGCG
CTATCCGCATCTGACATCGTTTCTGGAAACGATCCTTGTCGAAACCCTGGAATCGGCTTTGCCGAGCGGCAGTCTGCAGA
CCGTCGCCTCGCGCTCGATGTGTATCCCCCCGGCACGGGGTAAAACCTCGCTGGCTCTGTCTTCGAATTGA

Upstream 100 bases:

>100_bases
AATATATCTATATACATTATAGATTTTATAATCTAGTATCGGGAAGCAAACCGAGAGAATATTTCGTAATTTTCAAGCCG
ATGGTTGGAAAAGCTCAAGC

Downstream 100 bases:

>100_bases
TACGTTGTATTCAACCGCGCATACGATGTTGAAAACGGAAGTGTGTCCTCGTGATCCCTTGATTAGTGGGCTCGATCCCG
CTTTCTCCGGATTGGGGCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MRLTNLDMDLLRTLSVASELGGLGRAAERLGRSPSAISLQMHKLEEQVGKTLFRKQGRGISLTDAGDLLLGYARRILALN
DEALAATRGVGVEGIVRLGVPFDLTSEWLPKVLARFSEAYPRVHIELRTDRSVELLQLYNQDLLDLTLAFGPVERPGASF
VAEVPVRWIGSTGFRLDKNQDVPLILLDPPCWFRQTGIDALDRHQTAWRLAFTSPSLAGLWAATEAGLGITVRTPLGMPR
SLSALDPDHGLPDLPRVSIVLYNSARRYPHLTSFLETILVETLESALPSGSLQTVASRSMCIPPARGKTSLALSSN

Sequences:

>Translated_316_residues
MRLTNLDMDLLRTLSVASELGGLGRAAERLGRSPSAISLQMHKLEEQVGKTLFRKQGRGISLTDAGDLLLGYARRILALN
DEALAATRGVGVEGIVRLGVPFDLTSEWLPKVLARFSEAYPRVHIELRTDRSVELLQLYNQDLLDLTLAFGPVERPGASF
VAEVPVRWIGSTGFRLDKNQDVPLILLDPPCWFRQTGIDALDRHQTAWRLAFTSPSLAGLWAATEAGLGITVRTPLGMPR
SLSALDPDHGLPDLPRVSIVLYNSARRYPHLTSFLETILVETLESALPSGSLQTVASRSMCIPPARGKTSLALSSN
>Mature_316_residues
MRLTNLDMDLLRTLSVASELGGLGRAAERLGRSPSAISLQMHKLEEQVGKTLFRKQGRGISLTDAGDLLLGYARRILALN
DEALAATRGVGVEGIVRLGVPFDLTSEWLPKVLARFSEAYPRVHIELRTDRSVELLQLYNQDLLDLTLAFGPVERPGASF
VAEVPVRWIGSTGFRLDKNQDVPLILLDPPCWFRQTGIDALDRHQTAWRLAFTSPSLAGLWAATEAGLGITVRTPLGMPR
SLSALDPDHGLPDLPRVSIVLYNSARRYPHLTSFLETILVETLESALPSGSLQTVASRSMCIPPARGKTSLALSSN

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=286, Percent_Identity=33.5664335664336, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1787806, Length=150, Percent_Identity=28.6666666666667, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI157672245, Length=144, Percent_Identity=34.0277777777778, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790208, Length=200, Percent_Identity=27.5, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=149, Percent_Identity=34.8993288590604, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787879, Length=149, Percent_Identity=31.5436241610738, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34524; Mature: 34524

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTNLDMDLLRTLSVASELGGLGRAAERLGRSPSAISLQMHKLEEQVGKTLFRKQGRGI
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
SLTDAGDLLLGYARRILALNDEALAATRGVGVEGIVRLGVPFDLTSEWLPKVLARFSEAY
EECCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHCC
PRVHIELRTDRSVELLQLYNQDLLDLTLAFGPVERPGASFVAEVPVRWIGSTGFRLDKNQ
CEEEEEEECCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHCCHHHCCCCCEEECCCC
DVPLILLDPPCWFRQTGIDALDRHQTAWRLAFTSPSLAGLWAATEAGLGITVRTPLGMPR
CCCEEEECCCCHHHHCCCCHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCC
SLSALDPDHGLPDLPRVSIVLYNSARRYPHLTSFLETILVETLESALPSGSLQTVASRSM
CCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
CIPPARGKTSLALSSN
CCCCCCCCEEEEECCC
>Mature Secondary Structure
MRLTNLDMDLLRTLSVASELGGLGRAAERLGRSPSAISLQMHKLEEQVGKTLFRKQGRGI
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
SLTDAGDLLLGYARRILALNDEALAATRGVGVEGIVRLGVPFDLTSEWLPKVLARFSEAY
EECCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHCC
PRVHIELRTDRSVELLQLYNQDLLDLTLAFGPVERPGASFVAEVPVRWIGSTGFRLDKNQ
CEEEEEEECCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHCCHHHCCCCCEEECCCC
DVPLILLDPPCWFRQTGIDALDRHQTAWRLAFTSPSLAGLWAATEAGLGITVRTPLGMPR
CCCEEEECCCCHHHHCCCCHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCC
SLSALDPDHGLPDLPRVSIVLYNSARRYPHLTSFLETILVETLESALPSGSLQTVASRSM
CCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
CIPPARGKTSLALSSN
CCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]