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The map label for this gene is yncD [C]

Identifier: 182677302

GI number: 182677302

Start: 348097

End: 350514

Strand: Direct

Name: yncD [C]

Synonym: Bind_0305

Alternate gene names: 182677302

Gene position: 348097-350514 (Clockwise)

Preceding gene: 182677301

Following gene: 182677303

Centisome position: 8.35

GC content: 55.75

Gene sequence:

>2418_bases
ATGATGGGCAGGATTTTTATCAGCTTAGGCCTCGGTGCGGCCTTTTACTCTTGTCTCCCGGCATCGGCCCGCGCGCAAAC
TGCTCAGGAACCCATCGCTTTGCCAACGGTCGATATCGTCTCGACCGCGCCACTCGCCAGTGGCGCCGGCATCGACAGCA
ACAAACTCCCGGGACTGACGCAAACACTCACCCCACGAGATTTCCAACGCACCTATTCGCCGAATGTCACGGATGCGCTG
CAACAGCGGACGCCGACCGCCGTCTCGATCGACGTGAATGGCAATCCGCTTTCGCAGGATCTTTATTATCACGGTTTCGT
CGCCTCGCCGCGCCAGGGCACGCCGCAGGGGCTCGCCGTGTACCAGAATGGTATGCGTCTCAATGAGCCCTTCGGCGATA
CGGTCAATTGGGATCTGGTGCCACCACAGGCCATCGAGAGGACTGATATTTTCACCAATAATCCGGCCTTTGGTCTCAAT
GCGCTCGGTGGTGCGGTCAGCATCCAGATGAAAAATGGCTTCACCTGGCAAGGGTTTGAGGCACAGACCATGGGCGGTTC
CTACGGCCGCGTCTCCGGCATGCTGCAATACGGCAAACAAATCGATAATTTCAGCGTCTATTTCAGTGCCGACGCGACCC
GCGATGGCGGCTGGCGGTATAATTCCGCCTCTTCGCAAGTCCGCCTCTATGGCGATATCGGCTATCGTACACCCGATGCC
GAAGTGCATTTTATCGCCAATGGTGGCCAGAGCCTGCTCGGTGTCGTCGGCCCGACACCTTTCAGTCTTGTCAGCAATGA
CTATCGCAGTGTCTTCACCTCGCCGCAGACGACCGATAATCAGGCGGGCTCGCTGGCTTTGACCAGCCGCTTTCCCTTGA
GCGCGACCTGGACGGTCAATAGCAATTTCTATATGCGCGCCTTCAAGCAGATCCACACCGACGGCAATGACGCGAATGTC
GAAGGATGCAGCAGCCGTTCTTCCTATCCGGGCCAGCTTTGCCTGCAGGATGATGAATTCGAATATCTTTTAAATGGAGG
CCCGAAAACGACGGCCTTCCGCAATATGTTCGTCATCCGAAATCAGAATGGCCAGACGATCCCCTTTCAGGGGGATGATT
TCGCCTATGGCACGATCGACCGGACCTATATTCATTCCCTCAGCGTCGGCACCACCTTGCAGGCGACCAATACCGACAAG
ATTCTGGGCCACGACAATCACGTGACCTTTGGCGGCAGCATCGATCGCAGTCAGCTGAGCTTCAGTTCCTACAGCACGCT
TGGCCAGATCACGCCGGATTTCTCGGTGCAGACGACGGGTTTCCCGGGTTCCGGCTCAGTGATGCGCACGGATGGCAATC
TCGCCTATGTGCCGACCTACCTCAATGGCAATACCACTTATTACGGCGTCTATGTGATGGATACATTCGATGTGACGCCG
GATATTTCGATCACTGGCGGTGGACGCTTGAATATCGCCAATATCGTTACCCATGACACGACGGGCCAGGCGAGCGAACT
CAATATCAACGCTGCCTATACACGCATCAATCCTATCGGCGGACTCACCTGGCGCATCCTGCCGACGCTCACCGCTTATG
CCGGTTATTCGGAGGCCAATCGTGCGCCGACACCGCTTGAACTCGATTGCGCCAATCCGACGCGTCCGTGCATTCTCGAA
AACTCCCTCACGTCCGATCCCCCTTTGCAACAAGTCGTCTCACGCACGGTTGAGGCGGGCCTGCGCGGTTCGCAACCCGT
TCTGGATGATGGCAGTATTGATTGGAAACTCGGCTATTTCCGCACAGCGAACAGCAATGACATCATTACCCTCGCCAGCA
CGATTCCGGGGCGTGGCTATTATGCCAATGTGCCTGGCACCTTGCGGCAAGGCCTCGAACTCGGGATCGAATTTCACACG
GGCGACTGGCTTGCTTATTTGAATTACGGTTTCGTCGATGCGACCTATCAATTTTCCGGCGCGCTCTCCTCGCCCAACAA
TCCTTACGCCGATGCCAATGGCGATGTTTTCGTCCACCCCGGCAATCACATCCCGGGTATTCCACAGCAAATGCTGAAAT
TCGGCGCCGATTACAAAGTGACGCCGCAATTCACGGTCGGAGGTGACGTCCTCATCATTGGCTCGCAATATTATGTGGGC
GACAATTCGAACCAGAATCCGAAACTGCCGTCCTATTGGGTCGCCAATCTGCATGCTTCTTATCAGGTCAACGAGCACAT
CCAGTTCTTCGGTCTCATCAATAATCTCTTCAATCAGCACTATGCGACCTATGGCACATTTTACGGGACCGACACCAACG
CCCAGCTCGTGTCCAGCATTCCCTTCACCAATGATCCGCGCACGATCACGGCGGCGCAGCCGATTTCCTTCTATGGCGGA
ATGAAAGTCACTTTTTAA

Upstream 100 bases:

>100_bases
CCTATGAAAATCGTCGTTAAAACTTTAATTTTGCTGTTCGAGATTCGCATCTCGGTCTATAGAGTTTAAGTGGAATCAGT
TTCAAATAAGAACACGTGGA

Downstream 100 bases:

>100_bases
GGGTGAAATTCCGGGAAGCGGTCGAATTCAGGAGCGCCGTAAGGCTTTCTATGCCTTTTGGAGCGCTTTCCGCGTCGCTT
TCCGCCGCGGGTCGTATTAA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor YncD; NB-Dependent Siderophore Receptor; Outer Membrane Receptor Protein; Nb-Dependent Receptor; OM Receptor nB; NB Domain-Containing Protein; Outer Membrane Ferric Siderophore Receptor; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Plug; Outer Membrane Receptor For Monomeric Catechols; Ferrienterobactin-Like Protein; Outer Membrane Receptor; Outer Membrane Receptor Protein Mostly Fe Transport; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 805; Mature: 805

Protein sequence:

>805_residues
MMGRIFISLGLGAAFYSCLPASARAQTAQEPIALPTVDIVSTAPLASGAGIDSNKLPGLTQTLTPRDFQRTYSPNVTDAL
QQRTPTAVSIDVNGNPLSQDLYYHGFVASPRQGTPQGLAVYQNGMRLNEPFGDTVNWDLVPPQAIERTDIFTNNPAFGLN
ALGGAVSIQMKNGFTWQGFEAQTMGGSYGRVSGMLQYGKQIDNFSVYFSADATRDGGWRYNSASSQVRLYGDIGYRTPDA
EVHFIANGGQSLLGVVGPTPFSLVSNDYRSVFTSPQTTDNQAGSLALTSRFPLSATWTVNSNFYMRAFKQIHTDGNDANV
EGCSSRSSYPGQLCLQDDEFEYLLNGGPKTTAFRNMFVIRNQNGQTIPFQGDDFAYGTIDRTYIHSLSVGTTLQATNTDK
ILGHDNHVTFGGSIDRSQLSFSSYSTLGQITPDFSVQTTGFPGSGSVMRTDGNLAYVPTYLNGNTTYYGVYVMDTFDVTP
DISITGGGRLNIANIVTHDTTGQASELNINAAYTRINPIGGLTWRILPTLTAYAGYSEANRAPTPLELDCANPTRPCILE
NSLTSDPPLQQVVSRTVEAGLRGSQPVLDDGSIDWKLGYFRTANSNDIITLASTIPGRGYYANVPGTLRQGLELGIEFHT
GDWLAYLNYGFVDATYQFSGALSSPNNPYADANGDVFVHPGNHIPGIPQQMLKFGADYKVTPQFTVGGDVLIIGSQYYVG
DNSNQNPKLPSYWVANLHASYQVNEHIQFFGLINNLFNQHYATYGTFYGTDTNAQLVSSIPFTNDPRTITAAQPISFYGG
MKVTF

Sequences:

>Translated_805_residues
MMGRIFISLGLGAAFYSCLPASARAQTAQEPIALPTVDIVSTAPLASGAGIDSNKLPGLTQTLTPRDFQRTYSPNVTDAL
QQRTPTAVSIDVNGNPLSQDLYYHGFVASPRQGTPQGLAVYQNGMRLNEPFGDTVNWDLVPPQAIERTDIFTNNPAFGLN
ALGGAVSIQMKNGFTWQGFEAQTMGGSYGRVSGMLQYGKQIDNFSVYFSADATRDGGWRYNSASSQVRLYGDIGYRTPDA
EVHFIANGGQSLLGVVGPTPFSLVSNDYRSVFTSPQTTDNQAGSLALTSRFPLSATWTVNSNFYMRAFKQIHTDGNDANV
EGCSSRSSYPGQLCLQDDEFEYLLNGGPKTTAFRNMFVIRNQNGQTIPFQGDDFAYGTIDRTYIHSLSVGTTLQATNTDK
ILGHDNHVTFGGSIDRSQLSFSSYSTLGQITPDFSVQTTGFPGSGSVMRTDGNLAYVPTYLNGNTTYYGVYVMDTFDVTP
DISITGGGRLNIANIVTHDTTGQASELNINAAYTRINPIGGLTWRILPTLTAYAGYSEANRAPTPLELDCANPTRPCILE
NSLTSDPPLQQVVSRTVEAGLRGSQPVLDDGSIDWKLGYFRTANSNDIITLASTIPGRGYYANVPGTLRQGLELGIEFHT
GDWLAYLNYGFVDATYQFSGALSSPNNPYADANGDVFVHPGNHIPGIPQQMLKFGADYKVTPQFTVGGDVLIIGSQYYVG
DNSNQNPKLPSYWVANLHASYQVNEHIQFFGLINNLFNQHYATYGTFYGTDTNAQLVSSIPFTNDPRTITAAQPISFYGG
MKVTF
>Mature_805_residues
MMGRIFISLGLGAAFYSCLPASARAQTAQEPIALPTVDIVSTAPLASGAGIDSNKLPGLTQTLTPRDFQRTYSPNVTDAL
QQRTPTAVSIDVNGNPLSQDLYYHGFVASPRQGTPQGLAVYQNGMRLNEPFGDTVNWDLVPPQAIERTDIFTNNPAFGLN
ALGGAVSIQMKNGFTWQGFEAQTMGGSYGRVSGMLQYGKQIDNFSVYFSADATRDGGWRYNSASSQVRLYGDIGYRTPDA
EVHFIANGGQSLLGVVGPTPFSLVSNDYRSVFTSPQTTDNQAGSLALTSRFPLSATWTVNSNFYMRAFKQIHTDGNDANV
EGCSSRSSYPGQLCLQDDEFEYLLNGGPKTTAFRNMFVIRNQNGQTIPFQGDDFAYGTIDRTYIHSLSVGTTLQATNTDK
ILGHDNHVTFGGSIDRSQLSFSSYSTLGQITPDFSVQTTGFPGSGSVMRTDGNLAYVPTYLNGNTTYYGVYVMDTFDVTP
DISITGGGRLNIANIVTHDTTGQASELNINAAYTRINPIGGLTWRILPTLTAYAGYSEANRAPTPLELDCANPTRPCILE
NSLTSDPPLQQVVSRTVEAGLRGSQPVLDDGSIDWKLGYFRTANSNDIITLASTIPGRGYYANVPGTLRQGLELGIEFHT
GDWLAYLNYGFVDATYQFSGALSSPNNPYADANGDVFVHPGNHIPGIPQQMLKFGADYKVTPQFTVGGDVLIIGSQYYVG
DNSNQNPKLPSYWVANLHASYQVNEHIQFFGLINNLFNQHYATYGTFYGTDTNAQLVSSIPFTNDPRTITAAQPISFYGG
MKVTF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87360; Mature: 87360

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGRIFISLGLGAAFYSCLPASARAQTAQEPIALPTVDIVSTAPLASGAGIDSNKLPGLT
CCCEEEEEECHHHHHHHHCCCCHHHHHCCCCCCCCEEHHHCCCCCCCCCCCCCCCCCCCC
QTLTPRDFQRTYSPNVTDALQQRTPTAVSIDVNGNPLSQDLYYHGFVASPRQGTPQGLAV
CCCCCCHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEE
YQNGMRLNEPFGDTVNWDLVPPQAIERTDIFTNNPAFGLNALGGAVSIQMKNGFTWQGFE
EECCCEECCCCCCCCEECCCCCHHHCCCEEECCCCCCCCCCCCCEEEEEECCCCEECCEE
AQTMGGSYGRVSGMLQYGKQIDNFSVYFSADATRDGGWRYNSASSQVRLYGDIGYRTPDA
EEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEECCCCCEEEEEEECCCCCCCC
EVHFIANGGQSLLGVVGPTPFSLVSNDYRSVFTSPQTTDNQAGSLALTSRFPLSATWTVN
CEEEEECCCCEEEEECCCCCHHHHCCCHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEEC
SNFYMRAFKQIHTDGNDANVEGCSSRSSYPGQLCLQDDEFEYLLNGGPKTTAFRNMFVIR
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCEEEEEEEEE
NQNGQTIPFQGDDFAYGTIDRTYIHSLSVGTTLQATNTDKILGHDNHVTFGGSIDRSQLS
CCCCCCCCCCCCCCEECCCCHHEEEEECCCCEEEECCCCEEECCCCEEEECCCCCHHHCC
FSSYSTLGQITPDFSVQTTGFPGSGSVMRTDGNLAYVPTYLNGNTTYYGVYVMDTFDVTP
CHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCEEEEEEEECCCEEEEEEEEEEEECCCC
DISITGGGRLNIANIVTHDTTGQASELNINAAYTRINPIGGLTWRILPTLTAYAGYSEAN
CEEECCCCEEEEEEEEEECCCCCCEEEEEEEEEEEECCCCCCEEEHHHHHHHHCCCCCCC
RAPTPLELDCANPTRPCILENSLTSDPPLQQVVSRTVEAGLRGSQPVLDDGSIDWKLGYF
CCCCCEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEE
RTANSNDIITLASTIPGRGYYANVPGTLRQGLELGIEFHTGDWLAYLNYGFVDATYQFSG
EECCCCCEEEEEECCCCCCEEECCCHHHHCCHHEEEEEECCCEEEEEECCEEEEEEEECC
ALSSPNNPYADANGDVFVHPGNHIPGIPQQMLKFGADYKVTPQFTVGGDVLIIGSQYYVG
CCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCEEECCEEEECCCEEEECCEEEEC
DNSNQNPKLPSYWVANLHASYQVNEHIQFFGLINNLFNQHYATYGTFYGTDTNAQLVSSI
CCCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHEEEC
PFTNDPRTITAAQPISFYGGMKVTF
CCCCCCCEEEECCCEECCCCEEEEC
>Mature Secondary Structure
MMGRIFISLGLGAAFYSCLPASARAQTAQEPIALPTVDIVSTAPLASGAGIDSNKLPGLT
CCCEEEEEECHHHHHHHHCCCCHHHHHCCCCCCCCEEHHHCCCCCCCCCCCCCCCCCCCC
QTLTPRDFQRTYSPNVTDALQQRTPTAVSIDVNGNPLSQDLYYHGFVASPRQGTPQGLAV
CCCCCCHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEE
YQNGMRLNEPFGDTVNWDLVPPQAIERTDIFTNNPAFGLNALGGAVSIQMKNGFTWQGFE
EECCCEECCCCCCCCEECCCCCHHHCCCEEECCCCCCCCCCCCCEEEEEECCCCEECCEE
AQTMGGSYGRVSGMLQYGKQIDNFSVYFSADATRDGGWRYNSASSQVRLYGDIGYRTPDA
EEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEECCCCCEEEEEEECCCCCCCC
EVHFIANGGQSLLGVVGPTPFSLVSNDYRSVFTSPQTTDNQAGSLALTSRFPLSATWTVN
CEEEEECCCCEEEEECCCCCHHHHCCCHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEEC
SNFYMRAFKQIHTDGNDANVEGCSSRSSYPGQLCLQDDEFEYLLNGGPKTTAFRNMFVIR
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCEEEEEEEEE
NQNGQTIPFQGDDFAYGTIDRTYIHSLSVGTTLQATNTDKILGHDNHVTFGGSIDRSQLS
CCCCCCCCCCCCCCEECCCCHHEEEEECCCCEEEECCCCEEECCCCEEEECCCCCHHHCC
FSSYSTLGQITPDFSVQTTGFPGSGSVMRTDGNLAYVPTYLNGNTTYYGVYVMDTFDVTP
CHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCEEEEEEEECCCEEEEEEEEEEEECCCC
DISITGGGRLNIANIVTHDTTGQASELNINAAYTRINPIGGLTWRILPTLTAYAGYSEAN
CEEECCCCEEEEEEEEEECCCCCCEEEEEEEEEEEECCCCCCEEEHHHHHHHHCCCCCCC
RAPTPLELDCANPTRPCILENSLTSDPPLQQVVSRTVEAGLRGSQPVLDDGSIDWKLGYF
CCCCCEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEE
RTANSNDIITLASTIPGRGYYANVPGTLRQGLELGIEFHTGDWLAYLNYGFVDATYQFSG
EECCCCCEEEEEECCCCCCEEECCCHHHHCCHHEEEEEECCCEEEEEECCEEEEEEEECC
ALSSPNNPYADANGDVFVHPGNHIPGIPQQMLKFGADYKVTPQFTVGGDVLIIGSQYYVG
CCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCEEECCEEEECCCEEEECCEEEEC
DNSNQNPKLPSYWVANLHASYQVNEHIQFFGLINNLFNQHYATYGTFYGTDTNAQLVSSI
CCCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHEEEC
PFTNDPRTITAAQPISFYGGMKVTF
CCCCCCCEEEECCCEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA