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The map label for this gene is yodF [H]

Identifier: 182677078

GI number: 182677078

Start: 84190

End: 85686

Strand: Direct

Name: yodF [H]

Synonym: Bind_0076

Alternate gene names: 182677078

Gene position: 84190-85686 (Clockwise)

Preceding gene: 182677077

Following gene: 182677079

Centisome position: 2.02

GC content: 58.58

Gene sequence:

>1497_bases
ATGAAGACTGAGATCGATTACGCGGCGCTTGGCGTCTTTTTGTTCTTTTTCGTGCTCGTCACGCTTCTGGGCTTTGTCGC
CGCCTATTGGCGGCGTCCCAAAACCCTTGCCCATATCGATGAATGGGGGCTCGGCGGTCGCCAATTTGGGACCTGGATCA
CCTGGTTTCTCGTCGGTGGCGATTTCTATACAGCCTATACGGTGATCGCCGTGCCAGCCCTGGTCTATGCGACCGGAGCC
TTCGGTTTCTTCGCGCTGCCCTATACGATCATTGTCTATCCTTTTGTCTTCGCGGTCATGCCGATTTTGTGGAAGGTCGC
GAAAGACAATAATTACGTGACCGCCGCCGATGTCGTGCATGGGCGCTATGGCTCGCGTGGCCTCGAACTCGCCGTCGCCG
CCACTGGCGTCATCGCCACCATGCCTTACATCGCCTTGCAGCTCGTCGGTATGGCCGCGGTGATCCAGGCGCTGGGTCTC
ACGGGCGAATTGCCTTTGATCATCGCCTTTCTGGTGCTGGCTTTTTATACCTATTCCTCTGGCCTCAGAGCCCCCGCGCT
GATCGCTTTCGTTAAGGATGTGATGATTTATATCGTCGTCCTCGTCGCGATCGCCATCGTTCCGTTCAAGCTGGGGGGCT
ATGGCGCGGTGTTCCAGGCGGCTCAGGCGGCTTTCGAGGCCAAAGGCTCCGGCGGCATTCTGCTGGCGCCCGCGCAGATG
GTTCCCTATGCGTCGCTTGCGCTCGTCTCGGCGCTCGCGGCCTTCATGTATCCGCATACATTGACAGGTATTTTCGCGAG
CCGAAGCGGCGACACGATCCGCAAGAATGCCATGTTGCTGCCAGCCTATACGCTGCTGTTGGGTCTGCTCGCTTTGCTCG
GCTATATGGGCCATGCGGCCGGCCTCAAGCTCAGCCACAATAATGATGTCGTGCCGGCTCTGTTTCAGACTCTGTTTCCG
GGCTGGTTCGCAGGCTTTTCCTTCGCGGCCATCGCCATTGGCGCCTTGGTGCCGGCGGCGGTGATGAGCATTGGCGCTGC
CAATCTCTTCACCCGCAATTTCTGGAAGGCCTATGTCAATCCACAGGTGACACCGGCCGGTGAGGCGCAAGTGGCCAAGA
TCACCTCCATGCTGGTCAAGGTCGGCGCGCTTTTGGTCATTATCTACTTGCCGACCCAATTCGCCCTCGACCTGCAATTG
CTTGGAGGCCTGTGGATCCTGCAGACTTTCCCGGCCCTGATCTTTGGTCTCTTCACCCGGTTCTTCAAGGCCAAGGCTCT
TCTTATCGGCTGGGCTGTGGGTTTCGTCGTGGGGACCTATCTGGCCTGGAGTGACGGGCTGAAACCCTTGCACAAGCTCG
TGTACGGGGATTGGAATGTGACGCTTTATGTCGGTCTGATCGCGCTGACCTTGAATATTCTGGTCGCCGCAATCCTCAGC
CTGTTTCTGCCCGCGGATCGGCCCCTGGAGAAGGATCTGCAGGCGCCAGCCACCTGA

Upstream 100 bases:

>100_bases
TTCCCCTTCTTCTACTGGTATCAGCTTGCCTGGGTGCCAATAACCTCCCTGTTGCTTTTCTTTGTCTATCGGAGCCTCCA
GAGGGGCGGGCGGATTTCCC

Downstream 100 bases:

>100_bases
AGACAGGCTCTCGATCTTTGAAAACGCATAAGATTAGCCCCGAAAGTGGTTTCCGCTTTTGGGGCTAATGCTTTTAAGGG
CATGATTCGGCACGCAATTT

Product: Na+/solute symporter

Products: Na (I) [Cytoplasm]; pantothenate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MKTEIDYAALGVFLFFFVLVTLLGFVAAYWRRPKTLAHIDEWGLGGRQFGTWITWFLVGGDFYTAYTVIAVPALVYATGA
FGFFALPYTIIVYPFVFAVMPILWKVAKDNNYVTAADVVHGRYGSRGLELAVAATGVIATMPYIALQLVGMAAVIQALGL
TGELPLIIAFLVLAFYTYSSGLRAPALIAFVKDVMIYIVVLVAIAIVPFKLGGYGAVFQAAQAAFEAKGSGGILLAPAQM
VPYASLALVSALAAFMYPHTLTGIFASRSGDTIRKNAMLLPAYTLLLGLLALLGYMGHAAGLKLSHNNDVVPALFQTLFP
GWFAGFSFAAIAIGALVPAAVMSIGAANLFTRNFWKAYVNPQVTPAGEAQVAKITSMLVKVGALLVIIYLPTQFALDLQL
LGGLWILQTFPALIFGLFTRFFKAKALLIGWAVGFVVGTYLAWSDGLKPLHKLVYGDWNVTLYVGLIALTLNILVAAILS
LFLPADRPLEKDLQAPAT

Sequences:

>Translated_498_residues
MKTEIDYAALGVFLFFFVLVTLLGFVAAYWRRPKTLAHIDEWGLGGRQFGTWITWFLVGGDFYTAYTVIAVPALVYATGA
FGFFALPYTIIVYPFVFAVMPILWKVAKDNNYVTAADVVHGRYGSRGLELAVAATGVIATMPYIALQLVGMAAVIQALGL
TGELPLIIAFLVLAFYTYSSGLRAPALIAFVKDVMIYIVVLVAIAIVPFKLGGYGAVFQAAQAAFEAKGSGGILLAPAQM
VPYASLALVSALAAFMYPHTLTGIFASRSGDTIRKNAMLLPAYTLLLGLLALLGYMGHAAGLKLSHNNDVVPALFQTLFP
GWFAGFSFAAIAIGALVPAAVMSIGAANLFTRNFWKAYVNPQVTPAGEAQVAKITSMLVKVGALLVIIYLPTQFALDLQL
LGGLWILQTFPALIFGLFTRFFKAKALLIGWAVGFVVGTYLAWSDGLKPLHKLVYGDWNVTLYVGLIALTLNILVAAILS
LFLPADRPLEKDLQAPAT
>Mature_498_residues
MKTEIDYAALGVFLFFFVLVTLLGFVAAYWRRPKTLAHIDEWGLGGRQFGTWITWFLVGGDFYTAYTVIAVPALVYATGA
FGFFALPYTIIVYPFVFAVMPILWKVAKDNNYVTAADVVHGRYGSRGLELAVAATGVIATMPYIALQLVGMAAVIQALGL
TGELPLIIAFLVLAFYTYSSGLRAPALIAFVKDVMIYIVVLVAIAIVPFKLGGYGAVFQAAQAAFEAKGSGGILLAPAQM
VPYASLALVSALAAFMYPHTLTGIFASRSGDTIRKNAMLLPAYTLLLGLLALLGYMGHAAGLKLSHNNDVVPALFQTLFP
GWFAGFSFAAIAIGALVPAAVMSIGAANLFTRNFWKAYVNPQVTPAGEAQVAKITSMLVKVGALLVIIYLPTQFALDLQL
LGGLWILQTFPALIFGLFTRFFKAKALLIGWAVGFVVGTYLAWSDGLKPLHKLVYGDWNVTLYVGLIALTLNILVAAILS
LFLPADRPLEKDLQAPAT

Specific function: Catalyzes The Sodium-Dependent Uptake Of Extracellular Pantothenate. [C]

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 53494; Mature: 53494

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCCCHHHHCCCCCC
>Mature Secondary Structure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HHCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; pantothenate [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + pantothenate [Periplasm] = Na (I) [Cytoplasm] + pantothenate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]