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The map label for this gene is rnpA

Identifier: 182682732

GI number: 182682732

Start: 2534895

End: 2535260

Strand: Reverse

Name: rnpA

Synonym: XfasM23_2225

Alternate gene names: 182682732

Gene position: 2535260-2534895 (Counterclockwise)

Preceding gene: 182682733

Following gene: 182682731

Centisome position: 99.98

GC content: 45.36

Gene sequence:

>366_bases
TTGCCTTCGGAATATTATGTCGCCTTTGAGCAAGGTCGACGTTATTCGTCTGTTTTATTGAGATTGCATCATCTGCCGAC
TTCAGGACCAGTGCGTTTGGGCCTAGTAGTTTCCCGTAGAGTTGATATACGCGCTGTTAATCGTAATCGGATCAAACGAG
CACTGCGTGAGGTAATGCGCCAGATCGCCTATAAGTTAGTTCCAGGTGACTACGTGGTAGTTGTTCGTCAAACTGCCAAA
GACGTTAGTAATGCTGAATTGAGTGTGGCCTTATTGTCATTGTTACGGCGCATCGGAGCATTGCCTTTAGCTTCAATTGA
TAACGCAATGCTGCCTTTCTTCGAACGCAATTGTTCCCGTAAATAA

Upstream 100 bases:

>100_bases
TTAAATTTATCCTTTTAAACGCAGCTGAAAGTCAATTTTGTGTCTTCATTTGGGTACATTGAATTCATGTAAGCGCTTTC
CTCGTTCTGCTAGGATTTGT

Downstream 100 bases:

>100_bases
ACGAATTAGAACCCCGTTCCGACTGAACGAGAAATTTTTCTTAAATGAACCAGACTCGTGTATTACTGATATTTTCCTGG
CTGACGGTAGCAACACTATT

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MPSEYYVAFEQGRRYSSVLLRLHHLPTSGPVRLGLVVSRRVDIRAVNRNRIKRALREVMRQIAYKLVPGDYVVVVRQTAK
DVSNAELSVALLSLLRRIGALPLASIDNAMLPFFERNCSRK

Sequences:

>Translated_121_residues
MPSEYYVAFEQGRRYSSVLLRLHHLPTSGPVRLGLVVSRRVDIRAVNRNRIKRALREVMRQIAYKLVPGDYVVVVRQTAK
DVSNAELSVALLSLLRRIGALPLASIDNAMLPFFERNCSRK
>Mature_120_residues
PSEYYVAFEQGRRYSSVLLRLHHLPTSGPVRLGLVVSRRVDIRAVNRNRIKRALREVMRQIAYKLVPGDYVVVVRQTAKD
VSNAELSVALLSLLRRIGALPLASIDNAMLPFFERNCSRK

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 13790; Mature: 13659

Theoretical pI: Translated: 11.56; Mature: 11.56

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSEYYVAFEQGRRYSSVLLRLHHLPTSGPVRLGLVVSRRVDIRAVNRNRIKRALREVMR
CCCCEEEEHHHCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCHHHHHHHHHHHHH
QIAYKLVPGDYVVVVRQTAKDVSNAELSVALLSLLRRIGALPLASIDNAMLPFFERNCSR
HHHHHCCCCCEEEEEECHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
K
C
>Mature Secondary Structure 
PSEYYVAFEQGRRYSSVLLRLHHLPTSGPVRLGLVVSRRVDIRAVNRNRIKRALREVMR
CCCEEEEHHHCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCHHHHHHHHHHHHH
QIAYKLVPGDYVVVVRQTAKDVSNAELSVALLSLLRRIGALPLASIDNAMLPFFERNCSR
HHHHHCCCCCEEEEEECHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]