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The map label for this gene is rnaSA3 [H]

Identifier: 182682605

GI number: 182682605

Start: 2355394

End: 2355834

Strand: Direct

Name: rnaSA3 [H]

Synonym: XfasM23_2093

Alternate gene names: 182682605

Gene position: 2355394-2355834 (Clockwise)

Preceding gene: 182682603

Following gene: 182682606

Centisome position: 92.89

GC content: 51.93

Gene sequence:

>441_bases
ATGCTTAGAAAATTCACGCTATCGGCCACCGTTTTACTAGTGCTCGCCACGTTGTGGGGCATGCACTCATTACATGTTTC
TAATCCGGAATTTGCGCCAGGGTCGCAAAACCATCACGGCGGAGTACAGATCGCACCACCGGCATTACGCGCCAAAGATG
GGTTACCGGAATTTCTCCCCGCAGAAGCACGTACCTTGGTTAGACTCATTCAACAAGGAGGCCCTTTCCCTTATCGTAAG
GATGGCATCATCTTTGGCAACAGAGAAAAACGGCTACCAGCACGTCCATACGGTTATTACCGCGAATACACCGTAGAAAC
ACCAGGTTCTCACGATCGGGGTGCCCGACGGATCGTTACCGGTGGTGATCCCCCAGAGATCTGGTACTACAGTGACGATC
ACTACACGAGCTTCCGCAGCTTCAACGTATCAACGCGATGA

Upstream 100 bases:

>100_bases
GACTAGACACTGGCTTTGAGTTCTGCTTTTAGCGCCAATAGTCAAGTTAAAAACAACCAATCCAGACATACTCGCCACTC
TTCCTCTCCGACCCGGGCAT

Downstream 100 bases:

>100_bases
ATAGCAACACCCTCCGATTAGATCCCAGTGACCCCAAAAGCTCCAGGGTCTATCGGGTTGCCTCCAGCGATCTGCCTCAC
TTGGCCGCAGTGACCCATGC

Product: guanine-specific ribonuclease N1 and T1

Products: NA

Alternate protein names: RNase Sa3 [H]

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MLRKFTLSATVLLVLATLWGMHSLHVSNPEFAPGSQNHHGGVQIAPPALRAKDGLPEFLPAEARTLVRLIQQGGPFPYRK
DGIIFGNREKRLPARPYGYYREYTVETPGSHDRGARRIVTGGDPPEIWYYSDDHYTSFRSFNVSTR

Sequences:

>Translated_146_residues
MLRKFTLSATVLLVLATLWGMHSLHVSNPEFAPGSQNHHGGVQIAPPALRAKDGLPEFLPAEARTLVRLIQQGGPFPYRK
DGIIFGNREKRLPARPYGYYREYTVETPGSHDRGARRIVTGGDPPEIWYYSDDHYTSFRSFNVSTR
>Mature_146_residues
MLRKFTLSATVLLVLATLWGMHSLHVSNPEFAPGSQNHHGGVQIAPPALRAKDGLPEFLPAEARTLVRLIQQGGPFPYRK
DGIIFGNREKRLPARPYGYYREYTVETPGSHDRGARRIVTGGDPPEIWYYSDDHYTSFRSFNVSTR

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 16483; Mature: 16483

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKFTLSATVLLVLATLWGMHSLHVSNPEFAPGSQNHHGGVQIAPPALRAKDGLPEFLP
CCCEEHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
AEARTLVRLIQQGGPFPYRKDGIIFGNREKRLPARPYGYYREYTVETPGSHDRGARRIVT
HHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEE
GGDPPEIWYYSDDHYTSFRSFNVSTR
CCCCCEEEEECCCCCCEEEEECCCCC
>Mature Secondary Structure
MLRKFTLSATVLLVLATLWGMHSLHVSNPEFAPGSQNHHGGVQIAPPALRAKDGLPEFLP
CCCEEHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
AEARTLVRLIQQGGPFPYRKDGIIFGNREKRLPARPYGYYREYTVETPGSHDRGARRIVT
HHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEE
GGDPPEIWYYSDDHYTSFRSFNVSTR
CCCCCEEEEECCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1398084 [H]