Click here to switch to the map view.

The map label for this gene is yhdJ [C]

Identifier: 182682259

GI number: 182682259

Start: 1924082

End: 1924558

Strand: Reverse

Name: yhdJ [C]

Synonym: XfasM23_1741

Alternate gene names: 182682259

Gene position: 1924558-1924082 (Counterclockwise)

Preceding gene: 182682260

Following gene: 182682258

Centisome position: 75.9

GC content: 45.07

Gene sequence:

>477_bases
ATGATGCGCTTGCTTCGCAACGATGGTGCAATTTTCTATAACCATAAGTGGAGAGTGCAAGCGGGGCTTTTGCAAGATCG
TACTGACATTGTTACAGGGTTCCCTGTGCGGCAAATCATCATTTGGCAGCGTAATGGCGGGATTAACTTCAATTCCGGCT
ATTTTTTGCCAACGTATGAGGTGATCTACTTAATCGCAAAACCAGACTTCAAACTGAAGCCAAAAGCAAACGCCATAGGC
GATGTGTGGACTATCCCGCAAGAATCAAAGAACCCACACCCTGCTCCATTTCCTGTCGAATTAGCGCAACGCTGTATTGA
GTCTGTGGGTGCTGAACCTGTTTTAGACCCATTTATGGGGAGTGGAACAATTGCAGTTGCGGCTGAAATATTGGGTTATG
ACTGGGTTGGAATCGAAAAATCGCCTAAATACGTTGAAATGTCACTTGATAGGCTAAAGAGCCTCAAAGGAAAATAG

Upstream 100 bases:

>100_bases
CAAGTGAGCAAACGGGGCTCTTATCGAAGGTTTCGATAATCACGAAGATGTTATGCCGCATGACGAATATGTGCGGTGGC
AAAGGGATTGTCTAACTGAA

Downstream 100 bases:

>100_bases
TGACATCATGATTGCAGAAGACGTTTTTTTTCGAGAGTACGAGGCGTCTTGCAAAATGATTGGGTACAGCTTCCAGACTA
TCCGGGCTACAGAGGTACAG

Product: DNA methylase N-4/N-6 domain-containing protein

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: DNA Methylase N-4/N-6 Domain-Containing Protein; DNA Methylase N-4/N-6 Domain Protein; N6 Adenine-Specific DNA Methyltransferase; DNA Methyltransferase; DNA Methylase; DNA Methylase-Like; M4C-Methyltransferase; DNA Methylase-Like Protein

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFLPTYEVIYLIAKPDFKLKPKANAIG
DVWTIPQESKNPHPAPFPVELAQRCIESVGAEPVLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLKSLKGK

Sequences:

>Translated_158_residues
MMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFLPTYEVIYLIAKPDFKLKPKANAIG
DVWTIPQESKNPHPAPFPVELAQRCIESVGAEPVLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLKSLKGK
>Mature_158_residues
MMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFLPTYEVIYLIAKPDFKLKPKANAIG
DVWTIPQESKNPHPAPFPVELAQRCIESVGAEPVLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLKSLKGK

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 17805; Mature: 17805

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFLPTYE
CCEEEECCCEEEECCEEEEEECCCCCCCCEECCCCEEEEEEEECCCCCCCCCCCCCCCEE
VIYLIAKPDFKLKPKANAIGDVWTIPQESKNPHPAPFPVELAQRCIESVGAEPVLDPFMG
EEEEEECCCCEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
SGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLKSLKGK
CCHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFLPTYE
CCEEEECCCEEEECCEEEEEECCCCCCCCEECCCCEEEEEEEECCCCCCCCCCCCCCCEE
VIYLIAKPDFKLKPKANAIGDVWTIPQESKNPHPAPFPVELAQRCIESVGAEPVLDPFMG
EEEEEECCCCEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
SGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLKSLKGK
CCHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA