Definition | Xylella fastidiosa M23 chromosome, complete genome. |
---|---|
Accession | NC_010577 |
Length | 2,535,690 |
Click here to switch to the map view.
The map label for this gene is 182682222
Identifier: 182682222
GI number: 182682222
Start: 1882010
End: 1882504
Strand: Reverse
Name: 182682222
Synonym: XfasM23_1704
Alternate gene names: NA
Gene position: 1882504-1882010 (Counterclockwise)
Preceding gene: 182682223
Following gene: 182682221
Centisome position: 74.24
GC content: 50.3
Gene sequence:
>495_bases ATGATGAAGTTACGGGCATTTGTCGATTCGCTGCTTCGAGGTCGCGCACGTTCCCAGCAGGGAGCTGTTTTATATGTTGT GCTGGTGGTGTTGGTGCTATTGGCGTTGATCGGCATCGTTGGTATGCAAGTTGCAACCATGCAGGAGCGCATGTCTGCGA ATTATCTTGCGGCCAATATGGCTTTTCAGAGGGCTGAGTCGTTGGTGCGTGATCGGGAGTCCACGATTAATAATGGAGCC GAGTACGAGTACCAGAACTGCTTGGTTCCCTATGATCCTGTTGCTTGGGTGAACAGCATCGGTAAAGGCGTGGTTGCTGA TGTGCTGACGCGTAACATCAGTATTTGCATGCAACAGTGCAGTGCGAGCGCCGGTTCTGATCGGTCCGAGAGTGGCTGCA ATATGTTCCGTATCACTGTATTCAGTCGGGATCGTAATTCCGTTGATGCTTCAAGTTCCTTGTCATCCATTGACACTATT TTTGTCAGGCCTTGA
Upstream 100 bases:
>100_bases CGACGGTGCTATCTGTACATATCAATCCGCCATCGGATGGTCAATACCGGGCGGTGTACGAGACAACCGTCGCTTTACGC AATCGCTTATACGGGAACTG
Downstream 100 bases:
>100_bases GCAATGAAAAAAAACGTTCTGAAGTGCGTCTTGCTTTGCGTCATGTTCATCGGTCTTTGTTTTCTCGTGCGGCGCGGTAT CACGGGGCCTGGCCCATTGG
Product: PilX protein
Products: NA
Alternate protein names: PilX Protein
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MMKLRAFVDSLLRGRARSQQGAVLYVVLVVLVLLALIGIVGMQVATMQERMSANYLAANMAFQRAESLVRDRESTINNGA EYEYQNCLVPYDPVAWVNSIGKGVVADVLTRNISICMQQCSASAGSDRSESGCNMFRITVFSRDRNSVDASSSLSSIDTI FVRP
Sequences:
>Translated_164_residues MMKLRAFVDSLLRGRARSQQGAVLYVVLVVLVLLALIGIVGMQVATMQERMSANYLAANMAFQRAESLVRDRESTINNGA EYEYQNCLVPYDPVAWVNSIGKGVVADVLTRNISICMQQCSASAGSDRSESGCNMFRITVFSRDRNSVDASSSLSSIDTI FVRP >Mature_164_residues MMKLRAFVDSLLRGRARSQQGAVLYVVLVVLVLLALIGIVGMQVATMQERMSANYLAANMAFQRAESLVRDRESTINNGA EYEYQNCLVPYDPVAWVNSIGKGVVADVLTRNISICMQQCSASAGSDRSESGCNMFRITVFSRDRNSVDASSSLSSIDTI FVRP
Specific function: Unknown
COG id: COG4726
COG function: function code NU; Tfp pilus assembly protein PilX
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17997; Mature: 17997
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKLRAFVDSLLRGRARSQQGAVLYVVLVVLVLLALIGIVGMQVATMQERMSANYLAANM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFQRAESLVRDRESTINNGAEYEYQNCLVPYDPVAWVNSIGKGVVADVLTRNISICMQQC HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH SASAGSDRSESGCNMFRITVFSRDRNSVDASSSLSSIDTIFVRP CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCEEEECC >Mature Secondary Structure MMKLRAFVDSLLRGRARSQQGAVLYVVLVVLVLLALIGIVGMQVATMQERMSANYLAANM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFQRAESLVRDRESTINNGAEYEYQNCLVPYDPVAWVNSIGKGVVADVLTRNISICMQQC HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH SASAGSDRSESGCNMFRITVFSRDRNSVDASSSLSSIDTIFVRP CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA