Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182682002
Identifier: 182682002
GI number: 182682002
Start: 1628008
End: 1629150
Strand: Reverse
Name: 182682002
Synonym: XfasM23_1477
Alternate gene names: NA
Gene position: 1629150-1628008 (Counterclockwise)
Preceding gene: 182682003
Following gene: 182682001
Centisome position: 64.25
GC content: 45.23
Gene sequence:
>1143_bases ATGAAAGTGGTGCATGTTGTTCGTCAATTTCATCCGTCAATTGGTGGGATGGAGGATGTGGTCTTCAATATTGCGATGCA GCTGCATTTGCATGCTGGAATCGGTGTTGATGTTGTGACGTTGAACCGAGTATTTACTCAGTCTGATGTTCTACTTCCAT GTACTGATAAGTATCAGGGTGTGTCGATCCAGCGCATTGGTTATCGTGGTTCTTCGCGTTATCCATTGGCACCAGGAGTG TTGAGTATGTTGGATAAAGCCGATGTGATTCATGTACACGGTATTGATTTTTTTTATGACTTCCTGGCATTGACTCGAGT GTTACATGGAAAGCCAATGGTCGTTTCAACGCACGGTGGTTTCTTCCATACGGATTATGCATCAAGACTTAAATTACTTT GGTTCAATACGTTGACTAGGTTATCAGCGTTGGCTTATGCACGGATTATTGCGAGTAGTGAGAGTGATGGTGCGTTGTTT TCAAAGATCGTGGCGCCGAGTCGATTGCGAGTCATTGAAAATGGCGTAGATGTGGAGAAGTATGCAAGGTGTGGTGCTTC TGAAGCTGGACGCACTCTTTTGTATTTCGGGCGCTGGTCGATGAATAAGGGATTGTTGGAGACGTTGCAATTACTGGCTG TATTGTATGTGTTAGATCCGCGTTGGCGATTAATTATTGCTGGGCGTGAATATGATTATGATCAGGCTGCGTTGGTGTAT GAGGTGGATAGGCTTGGGTTATCTGAGCAGGTGGATTTTCATTGTAGTCCGTCACAGTCGCAGTTGCGCTTTTTAATGGA GCAAGCACAGTTTTTTATTTCACTGTCGCGGCATGAGGGTTTTGGTATCGCTGCAGTTGAGGCGATGAGTGCTGGATTGA TTCCTGTCTTGAGTGATATTCCACCATTTGCGCGTCTACATCGTGAGTCCGGTTTAGGTGTTTTGGTCGATCCATTACAA CCACAGCAGGCTGCAGTTGCTGTACAGGGATTGGCATTACAGGTAGATACTCATTTTATCGACTGGCGATCTCAAGCGAT GGCTTTCAGTGATCGTTATCACTGGCGTTATGTCATTGGTTGTTATCAGGATGAGTATTGTAGAGCCCTTGGATTAAGTG GTGAGCAGGAATTTCTGAGGTGA
Upstream 100 bases:
>100_bases TGAGCTTTAAATCTTTTTTTATCAAAAAATTATGGCTTGTTGCATTTAGTGGGGATCATTCGAATCTTTGTAATTTTGAA TGGAATGGGAGCACTGTTTA
Downstream 100 bases:
>100_bases ATGGTGTCTTTTTGTTTTGTGTTGTTTCCAGTATGTCGAAGCGATTGAATAGGTTTTTTTCAGTGGAGCACTATTGGTGG CGAATAAATTTTTTTCACAG
Product: group 1 glycosyl transferase
Products: NA
Alternate protein names: GumH Protein; Glycosyl Transferase Gt4J; LPS Biosynthesis Protein; Phosphatidylinositol Alpha-Mannosyltransferase; Xanthan Biosynthesis Glucuronosyltransferase GumH; Glycosyl Transferase WecB/TagA/CpsF Family; Glucosyltransferase
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MKVVHVVRQFHPSIGGMEDVVFNIAMQLHLHAGIGVDVVTLNRVFTQSDVLLPCTDKYQGVSIQRIGYRGSSRYPLAPGV LSMLDKADVIHVHGIDFFYDFLALTRVLHGKPMVVSTHGGFFHTDYASRLKLLWFNTLTRLSALAYARIIASSESDGALF SKIVAPSRLRVIENGVDVEKYARCGASEAGRTLLYFGRWSMNKGLLETLQLLAVLYVLDPRWRLIIAGREYDYDQAALVY EVDRLGLSEQVDFHCSPSQSQLRFLMEQAQFFISLSRHEGFGIAAVEAMSAGLIPVLSDIPPFARLHRESGLGVLVDPLQ PQQAAVAVQGLALQVDTHFIDWRSQAMAFSDRYHWRYVIGCYQDEYCRALGLSGEQEFLR
Sequences:
>Translated_380_residues MKVVHVVRQFHPSIGGMEDVVFNIAMQLHLHAGIGVDVVTLNRVFTQSDVLLPCTDKYQGVSIQRIGYRGSSRYPLAPGV LSMLDKADVIHVHGIDFFYDFLALTRVLHGKPMVVSTHGGFFHTDYASRLKLLWFNTLTRLSALAYARIIASSESDGALF SKIVAPSRLRVIENGVDVEKYARCGASEAGRTLLYFGRWSMNKGLLETLQLLAVLYVLDPRWRLIIAGREYDYDQAALVY EVDRLGLSEQVDFHCSPSQSQLRFLMEQAQFFISLSRHEGFGIAAVEAMSAGLIPVLSDIPPFARLHRESGLGVLVDPLQ PQQAAVAVQGLALQVDTHFIDWRSQAMAFSDRYHWRYVIGCYQDEYCRALGLSGEQEFLR >Mature_380_residues MKVVHVVRQFHPSIGGMEDVVFNIAMQLHLHAGIGVDVVTLNRVFTQSDVLLPCTDKYQGVSIQRIGYRGSSRYPLAPGV LSMLDKADVIHVHGIDFFYDFLALTRVLHGKPMVVSTHGGFFHTDYASRLKLLWFNTLTRLSALAYARIIASSESDGALF SKIVAPSRLRVIENGVDVEKYARCGASEAGRTLLYFGRWSMNKGLLETLQLLAVLYVLDPRWRLIIAGREYDYDQAALVY EVDRLGLSEQVDFHCSPSQSQLRFLMEQAQFFISLSRHEGFGIAAVEAMSAGLIPVLSDIPPFARLHRESGLGVLVDPLQ PQQAAVAVQGLALQVDTHFIDWRSQAMAFSDRYHWRYVIGCYQDEYCRALGLSGEQEFLR
Specific function: Unknown
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42661; Mature: 42661
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVVHVVRQFHPSIGGMEDVVFNIAMQLHLHAGIGVDVVTLNRVFTQSDVLLPCTDKYQG CHHHHHHHHHCCCCCCHHHHHHHHHHHEEEECCCCEEEEEEEHHHCCCCEEEECCCCCCC VSIQRIGYRGSSRYPLAPGVLSMLDKADVIHVHGIDFFYDFLALTRVLHGKPMVVSTHGG CEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEEECCC FFHTDYASRLKLLWFNTLTRLSALAYARIIASSESDGALFSKIVAPSRLRVIENGVDVEK EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHCCCCHHH YARCGASEAGRTLLYFGRWSMNKGLLETLQLLAVLYVLDPRWRLIIAGREYDYDQAALVY HHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEE EVDRLGLSEQVDFHCSPSQSQLRFLMEQAQFFISLSRHEGFGIAAVEAMSAGLIPVLSDI EHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHCCCHHHHHCC PPFARLHRESGLGVLVDPLQPQQAAVAVQGLALQVDTHFIDWRSQAMAFSDRYHWRYVIG CHHHHHHHHCCCEEEECCCCCHHHHHEEEEEEEEEECEEECHHHHHHHHCCCCCEEEEEE CYQDEYCRALGLSGEQEFLR ECCHHHHHHHCCCCHHHHCC >Mature Secondary Structure MKVVHVVRQFHPSIGGMEDVVFNIAMQLHLHAGIGVDVVTLNRVFTQSDVLLPCTDKYQG CHHHHHHHHHCCCCCCHHHHHHHHHHHEEEECCCCEEEEEEEHHHCCCCEEEECCCCCCC VSIQRIGYRGSSRYPLAPGVLSMLDKADVIHVHGIDFFYDFLALTRVLHGKPMVVSTHGG CEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEEECCC FFHTDYASRLKLLWFNTLTRLSALAYARIIASSESDGALFSKIVAPSRLRVIENGVDVEK EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHCCCCHHH YARCGASEAGRTLLYFGRWSMNKGLLETLQLLAVLYVLDPRWRLIIAGREYDYDQAALVY HHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEE EVDRLGLSEQVDFHCSPSQSQLRFLMEQAQFFISLSRHEGFGIAAVEAMSAGLIPVLSDI EHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHCCCHHHHHCC PPFARLHRESGLGVLVDPLQPQQAAVAVQGLALQVDTHFIDWRSQAMAFSDRYHWRYVIG CHHHHHHHHCCCEEEECCCCCHHHHHEEEEEEEEEECEEECHHHHHHHHCCCCCEEEEEE CYQDEYCRALGLSGEQEFLR ECCHHHHHHHCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA