Click here to switch to the map view.

The map label for this gene is yhgF [H]

Identifier: 182681838

GI number: 182681838

Start: 1432145

End: 1434463

Strand: Direct

Name: yhgF [H]

Synonym: XfasM23_1303

Alternate gene names: 182681838

Gene position: 1432145-1434463 (Clockwise)

Preceding gene: 182681837

Following gene: 182681839

Centisome position: 56.48

GC content: 53.13

Gene sequence:

>2319_bases
ATGCAAAACAGCCTCCTCACCCAGCATATTGCTCAGATCATTGCCACTGAGATCTCCTCACAGCCCACCCAAGCACGCGC
AGCCATCGCCTTGCTTGATGAAGGCGCAAGTGTCCCCTTCATCGCACGCTACCGTAAAGAAGCCACCGGCGGCCTGGATG
ACACCCAATTACGCACCCTCGAAACCCGATTAACCTACCTACGCGAACTGGAAGAACGCCGCTCAGCCATCCTCGCCAGC
ATCACCGAACAAGGCAAACTGAACGACCTCATACACGCCGAGATCCTCGCTGCCGACACCAAATCGCGTTTGGAGGACCT
CTATCTCCCATACAAACCCAAGCGCCGCACCCGCGCACAGATCGCACGCGAAGCAGGCTTAGAACCATTAGCCGATAGCC
TACTGACTGACCCCACACTGATTCCAGAGACCGTTGCCGCCAACTTTGTCGACCCTGAGAAAGGGATCACCGACATCAAA
ACCGCACTTGAAGGCGCACGTGCGATCCTGATAGAGCGCTGGGGAGAAGATGCCGCTCTGATCGGTGAACTACGTCAATG
GCTCACCAACAATGGAGTGATTCATGCACGCCTCATCGACAACAAAGAAGACACTGGAGCCAAATACAGAGACTACTTCA
ACCATACCGAAGTGCTCTCCAAAATTCCCTCACACCGCCTGCTCGCATTGTTCCGCGCGCGCTCTGAAGAAATACTGCAT
TTAGACCTAGATCCCGGTAATGATGCTGACGCTGGCCATCAATACTGTGAAAGCATGGTCATGCAAGCCGCATGTGTCGC
TGACCAAGGGCGCCCAGCGGATACATGGTTAATGACCGCCTGCCGCCTCACCTGGCGTGCCAAACTTCATATGCATTTGA
TGTTGGACCTCTTCAACCAAGCACGAGAAAAAGCCGAAGCAGAAGCAATCACTGTATTCAGCAATAACCTCAAAGATCTC
CTGCTAGCCGCACCGGCTGGACCACGCATCGTTCTGGGGATTGATCCAGGCATCCGCACCGGCTGCAAAATCGCTATCGT
CGACACCACCGGCAAACTGATCGCAACAGAAACAATCTACCCGCACGAGCCGCGGCGCGAGTGGGACAAATCACTACACA
CCCTAAAGACACTCTGCACCCAACATCACGTCACACTGATTGCCATTGGCAATGGCACCGCAAGCCGCGAGACCGACAAA
CTAGTAAGCGACCTGATCAAAGCGCATCCTGCATTGAAACTGCAAAAAATCGTTGTCAGCGAATCAGGAGCCTCCGTCTA
TTCTGCCTCCGAATCCGCCGCTAAAGAATTCCCCAACCTGGATGTCTCCTTACGCGGCGCCGTCTCAATTGCACGCCGCC
TCCAAGATCCGCTAGCTGAACTAGTTAAAATCGACCCCAAAGCAATCGGAGTTGGGCAATACCAACACGACGTCGACCAA
TTTCACCTCGCCAAAGCCCTGGATGCACGTGTAGAAGACTGCGTCAATGCCGTTGGAGTCTATGTCAACACAGCATCCGC
AGCATTGCTATCGCGCGTATCCGGCCTATCTGCGAGCGTCGCCGAAAACATCACTCGCTATCGCGACGAACACGGATCAT
TCAAACAACGCCAAGACCTGCTGAAAGTACCCAGACTCGGCGCAAAGACCTTTGAACAATGCGCCGGATTCCTTCGTATT
GCTGACGGCAACCAACCTCTGGACGCATCTGCAGTACATCCAGAAGCCTACCCAGTCGTCGAACGCATTGTGCAAACCAC
AGGCAAACCAATCAAAGCATTGATTGGCGATAGCCACACCTTACGCATGCTCAAACCAGAACAATTCACTGACACGAACT
TCGGAATACCAACCATCCGCGACATCATCAAAGAACTAGAAAAACCAGGCCGCGACCCACGTCCAGAATTCAAAGCTGTG
CGATTTACAGAAGGCGTAGAAAACATCAAAGACCTCAAACCAGGCATGATCCTTGAAGGAGTCGTTAGCAACGTCGCCGC
ATTTGGTGCCTTCGTCGATATTGGAGTACACCAAGACGGATTAATTCACATATCAGCCCTAGCGGACCGCTTCGTCAAAG
ACCCACGTGACATTGTCAAAGCGGGCGACATTGTCAAAGTCAAAGTTTTGGAGATTGATGTACCGCGCAAACGTATCGCA
CTGACCTGCCGCCTCCATGAAGAAACACCACCAGAAACCCCAGCAGCGAATAGAACTGGGAATGAACGCGGCAGACCCAA
CCCCGTTGCAAAAAAACTCAAAGCCACACCAACCGAAAACGCACTCGCACAAGCCTTCGCACGTGCACGACTCAAATGA

Upstream 100 bases:

>100_bases
CCTCCCATCCTAAATATAGTGGCGACGCTTTCCACGGTTTTCACAGCCTGATAAGGCTGCGACAATGCTGAATTCCTGAC
AAACGGCTACCGCCGGATCC

Downstream 100 bases:

>100_bases
ACGCACCCCGGGGCAACCCGACCCGGAAACATTCTCAGTCACATTAATATTACATCCACATACACTAAGCATTGTTTCCA
AGAAAAACGCGAACTTGCGA

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MQNSLLTQHIAQIIATEISSQPTQARAAIALLDEGASVPFIARYRKEATGGLDDTQLRTLETRLTYLRELEERRSAILAS
ITEQGKLNDLIHAEILAADTKSRLEDLYLPYKPKRRTRAQIAREAGLEPLADSLLTDPTLIPETVAANFVDPEKGITDIK
TALEGARAILIERWGEDAALIGELRQWLTNNGVIHARLIDNKEDTGAKYRDYFNHTEVLSKIPSHRLLALFRARSEEILH
LDLDPGNDADAGHQYCESMVMQAACVADQGRPADTWLMTACRLTWRAKLHMHLMLDLFNQAREKAEAEAITVFSNNLKDL
LLAAPAGPRIVLGIDPGIRTGCKIAIVDTTGKLIATETIYPHEPRREWDKSLHTLKTLCTQHHVTLIAIGNGTASRETDK
LVSDLIKAHPALKLQKIVVSESGASVYSASESAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVDQ
FHLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSASVAENITRYRDEHGSFKQRQDLLKVPRLGAKTFEQCAGFLRI
ADGNQPLDASAVHPEAYPVVERIVQTTGKPIKALIGDSHTLRMLKPEQFTDTNFGIPTIRDIIKELEKPGRDPRPEFKAV
RFTEGVENIKDLKPGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEIDVPRKRIA
LTCRLHEETPPETPAANRTGNERGRPNPVAKKLKATPTENALAQAFARARLK

Sequences:

>Translated_772_residues
MQNSLLTQHIAQIIATEISSQPTQARAAIALLDEGASVPFIARYRKEATGGLDDTQLRTLETRLTYLRELEERRSAILAS
ITEQGKLNDLIHAEILAADTKSRLEDLYLPYKPKRRTRAQIAREAGLEPLADSLLTDPTLIPETVAANFVDPEKGITDIK
TALEGARAILIERWGEDAALIGELRQWLTNNGVIHARLIDNKEDTGAKYRDYFNHTEVLSKIPSHRLLALFRARSEEILH
LDLDPGNDADAGHQYCESMVMQAACVADQGRPADTWLMTACRLTWRAKLHMHLMLDLFNQAREKAEAEAITVFSNNLKDL
LLAAPAGPRIVLGIDPGIRTGCKIAIVDTTGKLIATETIYPHEPRREWDKSLHTLKTLCTQHHVTLIAIGNGTASRETDK
LVSDLIKAHPALKLQKIVVSESGASVYSASESAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVDQ
FHLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSASVAENITRYRDEHGSFKQRQDLLKVPRLGAKTFEQCAGFLRI
ADGNQPLDASAVHPEAYPVVERIVQTTGKPIKALIGDSHTLRMLKPEQFTDTNFGIPTIRDIIKELEKPGRDPRPEFKAV
RFTEGVENIKDLKPGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEIDVPRKRIA
LTCRLHEETPPETPAANRTGNERGRPNPVAKKLKATPTENALAQAFARARLK
>Mature_772_residues
MQNSLLTQHIAQIIATEISSQPTQARAAIALLDEGASVPFIARYRKEATGGLDDTQLRTLETRLTYLRELEERRSAILAS
ITEQGKLNDLIHAEILAADTKSRLEDLYLPYKPKRRTRAQIAREAGLEPLADSLLTDPTLIPETVAANFVDPEKGITDIK
TALEGARAILIERWGEDAALIGELRQWLTNNGVIHARLIDNKEDTGAKYRDYFNHTEVLSKIPSHRLLALFRARSEEILH
LDLDPGNDADAGHQYCESMVMQAACVADQGRPADTWLMTACRLTWRAKLHMHLMLDLFNQAREKAEAEAITVFSNNLKDL
LLAAPAGPRIVLGIDPGIRTGCKIAIVDTTGKLIATETIYPHEPRREWDKSLHTLKTLCTQHHVTLIAIGNGTASRETDK
LVSDLIKAHPALKLQKIVVSESGASVYSASESAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVDQ
FHLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSASVAENITRYRDEHGSFKQRQDLLKVPRLGAKTFEQCAGFLRI
ADGNQPLDASAVHPEAYPVVERIVQTTGKPIKALIGDSHTLRMLKPEQFTDTNFGIPTIRDIIKELEKPGRDPRPEFKAV
RFTEGVENIKDLKPGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEIDVPRKRIA
LTCRLHEETPPETPAANRTGNERGRPNPVAKKLKATPTENALAQAFARARLK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=797, Percent_Identity=31.8695106649937, Blast_Score=357, Evalue=3e-98,
Organism=Homo sapiens, GI27597090, Length=245, Percent_Identity=29.3877551020408, Blast_Score=78, Evalue=2e-14,
Organism=Escherichia coli, GI87082262, Length=750, Percent_Identity=61.7333333333333, Blast_Score=919, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=82, Percent_Identity=42.6829268292683, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=716, Percent_Identity=28.3519553072626, Blast_Score=231, Evalue=1e-60,
Organism=Caenorhabditis elegans, GI17552892, Length=350, Percent_Identity=26.8571428571429, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI62484314, Length=770, Percent_Identity=31.4285714285714, Blast_Score=350, Evalue=3e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 85027; Mature: 85027

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNSLLTQHIAQIIATEISSQPTQARAAIALLDEGASVPFIARYRKEATGGLDDTQLRTL
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHH
ETRLTYLRELEERRSAILASITEQGKLNDLIHAEILAADTKSRLEDLYLPYKPKRRTRAQ
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IAREAGLEPLADSLLTDPTLIPETVAANFVDPEKGITDIKTALEGARAILIERWGEDAAL
HHHHCCCCHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
IGELRQWLTNNGVIHARLIDNKEDTGAKYRDYFNHTEVLSKIPSHRLLALFRARSEEILH
HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
LDLDPGNDADAGHQYCESMVMQAACVADQGRPADTWLMTACRLTWRAKLHMHLMLDLFNQ
EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AREKAEAEAITVFSNNLKDLLLAAPAGPRIVLGIDPGIRTGCKIAIVDTTGKLIATETIY
HHHHHHHHEEEEHHCCHHHHHEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEECCCC
PHEPRREWDKSLHTLKTLCTQHHVTLIAIGNGTASRETDKLVSDLIKAHPALKLQKIVVS
CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHC
ESGASVYSASESAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVDQ
CCCCCCCCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
FHLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSASVAENITRYRDEHGSFKQRQDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHH
LKVPRLGAKTFEQCAGFLRIADGNQPLDASAVHPEAYPVVERIVQTTGKPIKALIGDSHT
HHCCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCE
LRMLKPEQFTDTNFGIPTIRDIIKELEKPGRDPRPEFKAVRFTEGVENIKDLKPGMILEG
EEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
VVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEIDVPRKRIA
HHHHHHHHHHHHEECCCCCCCEEHHHHHHHHHCCHHHHHHCCCEEEEEEEEECCCCCEEE
LTCRLHEETPPETPAANRTGNERGRPNPVAKKLKATPTENALAQAFARARLK
EEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNSLLTQHIAQIIATEISSQPTQARAAIALLDEGASVPFIARYRKEATGGLDDTQLRTL
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHH
ETRLTYLRELEERRSAILASITEQGKLNDLIHAEILAADTKSRLEDLYLPYKPKRRTRAQ
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IAREAGLEPLADSLLTDPTLIPETVAANFVDPEKGITDIKTALEGARAILIERWGEDAAL
HHHHCCCCHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
IGELRQWLTNNGVIHARLIDNKEDTGAKYRDYFNHTEVLSKIPSHRLLALFRARSEEILH
HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
LDLDPGNDADAGHQYCESMVMQAACVADQGRPADTWLMTACRLTWRAKLHMHLMLDLFNQ
EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AREKAEAEAITVFSNNLKDLLLAAPAGPRIVLGIDPGIRTGCKIAIVDTTGKLIATETIY
HHHHHHHHEEEEHHCCHHHHHEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEECCCC
PHEPRREWDKSLHTLKTLCTQHHVTLIAIGNGTASRETDKLVSDLIKAHPALKLQKIVVS
CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHC
ESGASVYSASESAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVDQ
CCCCCCCCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
FHLAKALDARVEDCVNAVGVYVNTASAALLSRVSGLSASVAENITRYRDEHGSFKQRQDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHH
LKVPRLGAKTFEQCAGFLRIADGNQPLDASAVHPEAYPVVERIVQTTGKPIKALIGDSHT
HHCCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCE
LRMLKPEQFTDTNFGIPTIRDIIKELEKPGRDPRPEFKAVRFTEGVENIKDLKPGMILEG
EEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
VVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEIDVPRKRIA
HHHHHHHHHHHHEECCCCCCCEEHHHHHHHHHCCHHHHHHCCCEEEEEEEEECCCCCEEE
LTCRLHEETPPETPAANRTGNERGRPNPVAKKLKATPTENALAQAFARARLK
EEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]