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The map label for this gene is yhcM [H]

Identifier: 182681645

GI number: 182681645

Start: 1248513

End: 1249685

Strand: Direct

Name: yhcM [H]

Synonym: XfasM23_1103

Alternate gene names: 182681645

Gene position: 1248513-1249685 (Clockwise)

Preceding gene: 182681644

Following gene: 182681646

Centisome position: 49.24

GC content: 48.59

Gene sequence:

>1173_bases
GTGACCGAAATGACTCCCTCACAACGCTATGCCGCCGGCGTCGAACGTGGCCATTGGAATGACGATGTTACTCAACATGC
AGCCTTGGCAGAATTAGATCGAATCCATAACGCAATCATTCACAGCCCGCAGAATCGCTGGTGGGACAGTTTTACAGCAT
TGTGGAGAAAGCCAGAATTCGTGCAAGGGTTCTACTTTTGGGGTGGTGTAGGCCGCGGTAAGACTTTTTTGGTAGACCTG
TTCTACGATGGCTTACCTCTTAATAAATTTATCGCCGAACCTCAGCAGAACGAGAATATTCAAAGAACCAAATACCCTTT
CTCAAACCCTACCTCCCAAGGCGGTAAGTACCGCACTCACTTCCATCGCTTCATGCGTGGTATACACCAACGCTTGCGTG
CGCATGTCGGACACAGTGCCCCACTTGCCAAGATTGCAAAAGAATGGCGTGGCAATTTACGTGTGTTGGTATTGGACGAG
TTTTTTGTTACCGACATTGGCGACGCAATGTTACTTGCACGTCTGCTGGAACACCTGTTTGCAGAAGGAATCATCCTTGT
CACTACTTCCAATACTGCACCAGACAAGCTTTATTTAAACGGTCTACAGCGTGATAGCTTCCTACCGGCAATTGACTTGC
TAAAAAATTATTGCGTGGAGTTATATGCTGAAGGGACTGAGGACTACCGGATGCGCGCATTAACAGGTTCGCCTGTATAC
CGTACACCGTTGGACGCGCACGCCGATTCTTGGTTAACCCAGCGTTGGGGTGAGCTGAGCTGTGGTGAAACACCTCATCC
CGGCAACATTGCCATTGACGGACGCAAGATTCCGGCACGTGCCCGCGGTAAAAGCATTGCGTGGTTTGATTTCGCCGTGT
TATGCGAAGGTCCACGCAGTACGACTGACTACATTGAGCTAGCACGTGAATTCAATACAGTACTGATCGGTGGGATTCCT
CAATTCAATTTTCTAAATGAGGATGCAGCACAACGCTTCGTCAATCTGATTGACGAACTATATGATCGCCAAGTTAACTT
GGTTTGCACCGCATTCGGCACCCCGATACAGCTGTATCAGGGTGAGCGCTTAGCAAAGGCATTTGAACGTACTGCTTCAC
GCTTAAATGAAATGCAAAGTGCTGAATATATAGCCACTGCACATCGTGCCTGA

Upstream 100 bases:

>100_bases
TCATTTACGCGATGCCATCCAAGATGGTGTGCGCAGCTGGCTACCACAGCTGGCATAGATTTATAAGGACGTTGCACATA
CTGCAGCTATAGGATTTGAT

Downstream 100 bases:

>100_bases
CCTTTCTTTGCGCTAATGTAACCGCAGTACAAACAGTACAAATGAAGATATATTTCTGGCTGAGCGATGTTTATTGAAAA
ACACATCAATGTTGGCATAG

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MTEMTPSQRYAAGVERGHWNDDVTQHAALAELDRIHNAIIHSPQNRWWDSFTALWRKPEFVQGFYFWGGVGRGKTFLVDL
FYDGLPLNKFIAEPQQNENIQRTKYPFSNPTSQGGKYRTHFHRFMRGIHQRLRAHVGHSAPLAKIAKEWRGNLRVLVLDE
FFVTDIGDAMLLARLLEHLFAEGIILVTTSNTAPDKLYLNGLQRDSFLPAIDLLKNYCVELYAEGTEDYRMRALTGSPVY
RTPLDAHADSWLTQRWGELSCGETPHPGNIAIDGRKIPARARGKSIAWFDFAVLCEGPRSTTDYIELAREFNTVLIGGIP
QFNFLNEDAAQRFVNLIDELYDRQVNLVCTAFGTPIQLYQGERLAKAFERTASRLNEMQSAEYIATAHRA

Sequences:

>Translated_390_residues
MTEMTPSQRYAAGVERGHWNDDVTQHAALAELDRIHNAIIHSPQNRWWDSFTALWRKPEFVQGFYFWGGVGRGKTFLVDL
FYDGLPLNKFIAEPQQNENIQRTKYPFSNPTSQGGKYRTHFHRFMRGIHQRLRAHVGHSAPLAKIAKEWRGNLRVLVLDE
FFVTDIGDAMLLARLLEHLFAEGIILVTTSNTAPDKLYLNGLQRDSFLPAIDLLKNYCVELYAEGTEDYRMRALTGSPVY
RTPLDAHADSWLTQRWGELSCGETPHPGNIAIDGRKIPARARGKSIAWFDFAVLCEGPRSTTDYIELAREFNTVLIGGIP
QFNFLNEDAAQRFVNLIDELYDRQVNLVCTAFGTPIQLYQGERLAKAFERTASRLNEMQSAEYIATAHRA
>Mature_389_residues
TEMTPSQRYAAGVERGHWNDDVTQHAALAELDRIHNAIIHSPQNRWWDSFTALWRKPEFVQGFYFWGGVGRGKTFLVDLF
YDGLPLNKFIAEPQQNENIQRTKYPFSNPTSQGGKYRTHFHRFMRGIHQRLRAHVGHSAPLAKIAKEWRGNLRVLVLDEF
FVTDIGDAMLLARLLEHLFAEGIILVTTSNTAPDKLYLNGLQRDSFLPAIDLLKNYCVELYAEGTEDYRMRALTGSPVYR
TPLDAHADSWLTQRWGELSCGETPHPGNIAIDGRKIPARARGKSIAWFDFAVLCEGPRSTTDYIELAREFNTVLIGGIPQ
FNFLNEDAAQRFVNLIDELYDRQVNLVCTAFGTPIQLYQGERLAKAFERTASRLNEMQSAEYIATAHRA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=426, Percent_Identity=29.81220657277, Blast_Score=193, Evalue=3e-49,
Organism=Escherichia coli, GI1789627, Length=400, Percent_Identity=38.5, Blast_Score=263, Evalue=2e-71,
Organism=Caenorhabditis elegans, GI17505769, Length=439, Percent_Identity=28.7015945330296, Blast_Score=182, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6320783, Length=438, Percent_Identity=26.7123287671233, Blast_Score=144, Evalue=2e-35,
Organism=Drosophila melanogaster, GI20129913, Length=453, Percent_Identity=28.0353200883002, Blast_Score=153, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 44510; Mature: 44379

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEMTPSQRYAAGVERGHWNDDVTQHAALAELDRIHNAIIHSPQNRWWDSFTALWRKPEF
CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
VQGFYFWGGVGRGKTFLVDLFYDGLPLNKFIAEPQQNENIQRTKYPFSNPTSQGGKYRTH
HHHHHEECCCCCCCEEEEEEHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
FHRFMRGIHQRLRAHVGHSAPLAKIAKEWRGNLRVLVLDEFFVTDIGDAMLLARLLEHLF
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHH
AEGIILVTTSNTAPDKLYLNGLQRDSFLPAIDLLKNYCVELYAEGTEDYRMRALTGSPVY
HCCEEEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCC
RTPLDAHADSWLTQRWGELSCGETPHPGNIAIDGRKIPARARGKSIAWFDFAVLCEGPRS
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCHHHCCCEEEEEEEEEEECCCCC
TTDYIELAREFNTVLIGGIPQFNFLNEDAAQRFVNLIDELYDRQVNLVCTAFGTPIQLYQ
HHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHC
GERLAKAFERTASRLNEMQSAEYIATAHRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TEMTPSQRYAAGVERGHWNDDVTQHAALAELDRIHNAIIHSPQNRWWDSFTALWRKPEF
CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
VQGFYFWGGVGRGKTFLVDLFYDGLPLNKFIAEPQQNENIQRTKYPFSNPTSQGGKYRTH
HHHHHEECCCCCCCEEEEEEHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
FHRFMRGIHQRLRAHVGHSAPLAKIAKEWRGNLRVLVLDEFFVTDIGDAMLLARLLEHLF
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHH
AEGIILVTTSNTAPDKLYLNGLQRDSFLPAIDLLKNYCVELYAEGTEDYRMRALTGSPVY
HCCEEEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCC
RTPLDAHADSWLTQRWGELSCGETPHPGNIAIDGRKIPARARGKSIAWFDFAVLCEGPRS
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCHHHCCCEEEEEEEEEEECCCCC
TTDYIELAREFNTVLIGGIPQFNFLNEDAAQRFVNLIDELYDRQVNLVCTAFGTPIQLYQ
HHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHC
GERLAKAFERTASRLNEMQSAEYIATAHRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]