| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is 182681608
Identifier: 182681608
GI number: 182681608
Start: 1216176
End: 1216850
Strand: Direct
Name: 182681608
Synonym: XfasM23_1066
Alternate gene names: NA
Gene position: 1216176-1216850 (Clockwise)
Preceding gene: 182681607
Following gene: 182681611
Centisome position: 47.96
GC content: 44.3
Gene sequence:
>675_bases ATGGATAAATACGAAATGCGCCGATTAGCGCTTAAAGCTCTATCTGACAAGCTTGGCTATGGCGGTAAAGCGATGATTGC CGCGAAGATAGGTAAAGATTCCAGTTACGTGTCGCGGATGCTTTATCCGCCAAAGAAAGCTGGTCGCAAGCGAATCGGTG AAGATATGTTTGAGCTTCTGGTTAGAGCGTATCCAGATGCATTCAAGGAAATTGCTACCATGTCAAGGGCATTAGATAAT CGGGAGGATACTAACTATGTTCGTGTTCAGCATATTGAAGCAGAGGCGCATATGGGACCAGGTCGTATCAATGAGGATTT ACCTGAAGTTATAAACTCTGTTGAGTTCCCACCAAATTACATCCGCTCACTCATTGGATTCTTACCACCACCAGGCCGAC TCAAGCTGATTACCGGAACCGGTAATTCAATGTCGCCAAAGATTCTCCCAGGTGAAACTGTGCTCGTTGATACTGGTTGC AATACGTTTGTTGGGGATGGGCTTTACCTTGTCAATACAGGTAGCGGTCAGCAAATCAAAGCGTTACATGAGAGAAACGG ATACATCTACATTACCAGCATGGATAAAGATCTTTATCCTGACTTCGTTGCCGATGAAAATACAATTATTGGTGGGCGCG TTTATCTCATTCAGCACTTAGAAAGAGTTTCTTGA
Upstream 100 bases:
>100_bases TACGCAGGGTTTCCATGACGTGAATATACCCTAGGGTAATTACCCAATTCAATACCCATAGACAATTTACTTAAAGGTAA CGAAATTGTCGAATAGCAAC
Downstream 100 bases:
>100_bases TGTCCCTTGCCAGTTCTTCAAAGAGATGAATTGTTTCCAGTATTCGTGGATTACTCATTATCTTTAAAAAGCTGATCAGA TATTCCTTCGCGGATGATAC
Product: putative phage repressor
Products: NA
Alternate protein names: Transcriptional Regulator
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MDKYEMRRLALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMFELLVRAYPDAFKEIATMSRALDN REDTNYVRVQHIEAEAHMGPGRINEDLPEVINSVEFPPNYIRSLIGFLPPPGRLKLITGTGNSMSPKILPGETVLVDTGC NTFVGDGLYLVNTGSGQQIKALHERNGYIYITSMDKDLYPDFVADENTIIGGRVYLIQHLERVS
Sequences:
>Translated_224_residues MDKYEMRRLALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMFELLVRAYPDAFKEIATMSRALDN REDTNYVRVQHIEAEAHMGPGRINEDLPEVINSVEFPPNYIRSLIGFLPPPGRLKLITGTGNSMSPKILPGETVLVDTGC NTFVGDGLYLVNTGSGQQIKALHERNGYIYITSMDKDLYPDFVADENTIIGGRVYLIQHLERVS >Mature_224_residues MDKYEMRRLALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMFELLVRAYPDAFKEIATMSRALDN REDTNYVRVQHIEAEAHMGPGRINEDLPEVINSVEFPPNYIRSLIGFLPPPGRLKLITGTGNSMSPKILPGETVLVDTGC NTFVGDGLYLVNTGSGQQIKALHERNGYIYITSMDKDLYPDFVADENTIIGGRVYLIQHLERVS
Specific function: Unknown
COG id: COG2932
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25002; Mature: 25002
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKYEMRRLALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMFELL CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH VRAYPDAFKEIATMSRALDNREDTNYVRVQHIEAEAHMGPGRINEDLPEVINSVEFPPNY HHHCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHH IRSLIGFLPPPGRLKLITGTGNSMSPKILPGETVLVDTGCNTFVGDGLYLVNTGSGQQIK HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEECCCEEEEECCCCCHHH ALHERNGYIYITSMDKDLYPDFVADENTIIGGRVYLIQHLERVS HHHHCCCEEEEEECCCCCCCCCCCCCCEEECHHHHHHHHHHHCC >Mature Secondary Structure MDKYEMRRLALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPKKAGRKRIGEDMFELL CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH VRAYPDAFKEIATMSRALDNREDTNYVRVQHIEAEAHMGPGRINEDLPEVINSVEFPPNY HHHCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHH IRSLIGFLPPPGRLKLITGTGNSMSPKILPGETVLVDTGCNTFVGDGLYLVNTGSGQQIK HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEECCCEEEEECCCCCHHH ALHERNGYIYITSMDKDLYPDFVADENTIIGGRVYLIQHLERVS HHHHCCCEEEEEECCCCCCCCCCCCCCEEECHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA