| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is 182681394
Identifier: 182681394
GI number: 182681394
Start: 997351
End: 997818
Strand: Reverse
Name: 182681394
Synonym: XfasM23_0843
Alternate gene names: NA
Gene position: 997818-997351 (Counterclockwise)
Preceding gene: 182681395
Following gene: 182681393
Centisome position: 39.35
GC content: 50.64
Gene sequence:
>468_bases ATGAGCACACGTCACTACTGGTTAATGAAATCCGAACCAGATGCTTTCTCAATTGATGATCTACAGCAGGTTGGTACCGA GCCATGGAACGGCGTACGCAATTACCAAGCACGCAACTTCATCCGCGACAAAATACATATAGGCGACGGTGTGTTGTTCT ACCATTCCAACTGCAAGCCCCCGGGAATCGTCGGCCTCGCCAAAATAGCAAGCGCAGCCTATCCGGACGAAAGCCAATTC GACCCAAACTCCGACTATTACGACCCCAAAGCCAATCGAGAGCAGCCCCGCTGGTACTTGGTAGACATCGCATTCGAGCG CAAACTAGCACGCACCATCACACTTGAAAATATCAAACAATATGCCAAAACCCTCGGTGAAGGCTTTCCACTGATCACAC GCGGCAACCGGCTTTCCGTATTCCCGGTCACTACGAGCCAATGGAAATTGCTACTGTCACTAGAGTGA
Upstream 100 bases:
>100_bases TACAGCAAGTCAGCGCACTGCCAACTGAAGCCTGGGACATCCCCGTCGATGCGATCTGCACTGAACTGACCACACTCCTA TTCACCACTACTGTGTCCAC
Downstream 100 bases:
>100_bases ACTCAACACAGCCAGCCAATGCCTGTGCGCCTTCCCACATCCCCATCATCATTGATAACCCCATGAGCGAAGCAAAACGG CGCGCCGCCGAAAAGGCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MSTRHYWLMKSEPDAFSIDDLQQVGTEPWNGVRNYQARNFIRDKIHIGDGVLFYHSNCKPPGIVGLAKIASAAYPDESQF DPNSDYYDPKANREQPRWYLVDIAFERKLARTITLENIKQYAKTLGEGFPLITRGNRLSVFPVTTSQWKLLLSLE
Sequences:
>Translated_155_residues MSTRHYWLMKSEPDAFSIDDLQQVGTEPWNGVRNYQARNFIRDKIHIGDGVLFYHSNCKPPGIVGLAKIASAAYPDESQF DPNSDYYDPKANREQPRWYLVDIAFERKLARTITLENIKQYAKTLGEGFPLITRGNRLSVFPVTTSQWKLLLSLE >Mature_154_residues STRHYWLMKSEPDAFSIDDLQQVGTEPWNGVRNYQARNFIRDKIHIGDGVLFYHSNCKPPGIVGLAKIASAAYPDESQFD PNSDYYDPKANREQPRWYLVDIAFERKLARTITLENIKQYAKTLGEGFPLITRGNRLSVFPVTTSQWKLLLSLE
Specific function: Unknown
COG id: COG2947
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI83267861, Length=167, Percent_Identity=45.5089820359281, Blast_Score=141, Evalue=3e-34, Organism=Homo sapiens, GI40806221, Length=167, Percent_Identity=45.5089820359281, Blast_Score=141, Evalue=3e-34, Organism=Homo sapiens, GI7661804, Length=167, Percent_Identity=45.5089820359281, Blast_Score=141, Evalue=3e-34, Organism=Homo sapiens, GI83267859, Length=109, Percent_Identity=48.6238532110092, Blast_Score=112, Evalue=1e-25, Organism=Homo sapiens, GI40806219, Length=109, Percent_Identity=48.6238532110092, Blast_Score=112, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17869; Mature: 17738
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTRHYWLMKSEPDAFSIDDLQQVGTEPWNGVRNYQARNFIRDKIHIGDGVLFYHSNCKP CCCCEEEEEECCCCCCCHHHHHHHCCCCCCCHHCHHHHHHHHHEEEECCEEEEEECCCCC PGIVGLAKIASAAYPDESQFDPNSDYYDPKANREQPRWYLVDIAFERKLARTITLENIKQ CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHH YAKTLGEGFPLITRGNRLSVFPVTTSQWKLLLSLE HHHHHHCCCCEEEECCEEEEEEECCCCEEEEEEEC >Mature Secondary Structure STRHYWLMKSEPDAFSIDDLQQVGTEPWNGVRNYQARNFIRDKIHIGDGVLFYHSNCKP CCCEEEEEECCCCCCCHHHHHHHCCCCCCCHHCHHHHHHHHHEEEECCEEEEEECCCCC PGIVGLAKIASAAYPDESQFDPNSDYYDPKANREQPRWYLVDIAFERKLARTITLENIKQ CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHH YAKTLGEGFPLITRGNRLSVFPVTTSQWKLLLSLE HHHHHHCCCCEEEECCEEEEEEECCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA