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The map label for this gene is rarA [H]

Identifier: 182681262

GI number: 182681262

Start: 835588

End: 836949

Strand: Direct

Name: rarA [H]

Synonym: XfasM23_0707

Alternate gene names: 182681262

Gene position: 835588-836949 (Clockwise)

Preceding gene: 182681261

Following gene: 182681263

Centisome position: 32.95

GC content: 54.48

Gene sequence:

>1362_bases
GTGACACGACAGCGCTTTCCGACTCTTCAGCATGATTTGCTTGGTGTGGCTCCTCTCTTGCAGCCACTGGCCGAGCGCAT
GCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGACCCAGATCGTGCATTGCATCGTGCGGTTGCTT
CCGGGCATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATTAC
ATTGATGCAGAATTTCGGTCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGACGCTGCGCA
GCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTTTC
TGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGTTA
CTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATTGTTGTGGCATTGCAGCGGGCGTTGCAGGA
TACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTCAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGGTG
ACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGCAGATAACCGCTGACTTGCTTTCG
CAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTGCACAAGAG
TGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTATCTACTTGG
CCCGGCGCTTGACCCGCATAGCGATTGAGGATATTGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGGAGGCTTGG
GATATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGTACAGCAAA
ATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCCGCTACATC
TGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTGAGAACGGT
GTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTATCAACCGGTATCCCGCGGTCTGGAGAT
TAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCCGCCGCGTGCAT
AG

Upstream 100 bases:

>100_bases
CTCGAGAGTAGGAGAGAGGGGGGGGGGGACGTTGGCAGCCGTTTTTGATATTTATCGATCCCTGCGGACGGGGGGCGTCC
TACTCACGATACAATGAGAC

Downstream 100 bases:

>100_bases
AAGATAACATCGCTCCTCAAGCTGTGTGTGGCGACGTTGTGTGCTAATTGTGTCTTTTGCTTTTTTCCTTCCTCTGGATT
TATGTTCAATTGGAGCATGA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MTRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLDPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRSVSAVLSGLPEVRQILADAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIAAELAQDEQITADLLS
QVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRIAIEDIGLADPRAQSMALEAW
DIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENG
VALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDWLRAARAQIQADKPQPPRA

Sequences:

>Translated_453_residues
MTRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLDPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRSVSAVLSGLPEVRQILADAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIAAELAQDEQITADLLS
QVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRIAIEDIGLADPRAQSMALEAW
DIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENG
VALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDWLRAARAQIQADKPQPPRA
>Mature_452_residues
TRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLDPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHYI
DAEFRSVSAVLSGLPEVRQILADAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSALL
SRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIAAELAQDEQITADLLSQ
VLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRIAIEDIGLADPRAQSMALEAWD
IYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENGV
ALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDWLRAARAQIQADKPQPPRA

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=420, Percent_Identity=42.6190476190476, Blast_Score=299, Evalue=3e-81,
Organism=Homo sapiens, GI18426904, Length=420, Percent_Identity=38.5714285714286, Blast_Score=244, Evalue=1e-64,
Organism=Escherichia coli, GI1787119, Length=422, Percent_Identity=53.5545023696682, Blast_Score=465, Evalue=1e-132,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=38.7323943661972, Blast_Score=296, Evalue=4e-81,
Organism=Saccharomyces cerevisiae, GI6324039, Length=212, Percent_Identity=27.8301886792453, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50555; Mature: 50424

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLDPDRALHRAVASGHVHSM
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHCCCHHHHHHHHHHCCCCEEE
ILWGPPGCGKTTLSLLLAHYIDAEFRSVSAVLSGLPEVRQILADAAQRFSEGRRTVLFVD
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEHH
EVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSALLSRCRVHVLEAVSSQDIVVA
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
LQRALQDTERGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIAAELAQDEQITADLLS
HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
AIEDIGLADPRAQSMALEAWDIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKE
HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH
DIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENGVALEQTCFPDALGERIYYQP
HHHHCCCCCCCEEECCCHHHHHHHHCCCEEEEECCCCCCCCEEHHHCCHHHHCCCEEHHH
VSRGLEIKLKEKLDWLRAARAQIQADKPQPPRA
HCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLDPDRALHRAVASGHVHSM
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHCCCHHHHHHHHHHCCCCEEE
ILWGPPGCGKTTLSLLLAHYIDAEFRSVSAVLSGLPEVRQILADAAQRFSEGRRTVLFVD
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEHH
EVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSALLSRCRVHVLEAVSSQDIVVA
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
LQRALQDTERGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIAAELAQDEQITADLLS
HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
AIEDIGLADPRAQSMALEAWDIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKE
HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH
DIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENGVALEQTCFPDALGERIYYQP
HHHHCCCCCCCEEECCCHHHHHHHHCCCEEEEECCCCCCCCEEHHHCCHHHHCCCEEHHH
VSRGLEIKLKEKLDWLRAARAQIQADKPQPPRA
HCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]