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The map label for this gene is clpS

Identifier: 182681253

GI number: 182681253

Start: 822855

End: 823175

Strand: Direct

Name: clpS

Synonym: XfasM23_0698

Alternate gene names: 182681253

Gene position: 822855-823175 (Clockwise)

Preceding gene: 182681249

Following gene: 182681254

Centisome position: 32.45

GC content: 45.79

Gene sequence:

>321_bases
ATGTCACAAAAGACCGTACACGATCAGGATAATGCATTACTGTTGGAGACTGGTAATACCAAAGTTGCGCCGCCACCGCG
GTATCAGGTGTTGCTCCTGAATGACGATTACACTCCAATGGATTTTGTTATTGTGGTGTTGCAGCAATTCTTTGCTATGG
ATCTTAAGAAGGCAACTCAGGTGATGTTGCATGTACATACTCGTGGTCGTGGTGTGTGTGGGTTCTATACGCGTGAAGTG
GCTGAATCGAAGGTTGCGCAGGTTAACGAATTTTCCCGGATACATCAGCATCCGCTGTTATGTACGATGAAACAGGCATA
A

Upstream 100 bases:

>100_bases
TTGATGTTAGAGCGTCTGAATGAGGGGAAGAGTTGTGAATCGTAGCTTGTTGATCGTCCAATCCGATATGTTCTCGTTCT
CCGCCGTATAATCACTCAGA

Downstream 100 bases:

>100_bases
ACCCTTACATTCCAATTTTACTGGGGCTGTATAGTCGGCCCTAACGGTGTCTGAATGCTTTGATTTAGCAGGGCTGTGGA
AAATCCCCGCTCATGCCTCA

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSQKTVHDQDNALLLETGNTKVAPPPRYQVLLLNDDYTPMDFVIVVLQQFFAMDLKKATQVMLHVHTRGRGVCGFYTREV
AESKVAQVNEFSRIHQHPLLCTMKQA

Sequences:

>Translated_106_residues
MSQKTVHDQDNALLLETGNTKVAPPPRYQVLLLNDDYTPMDFVIVVLQQFFAMDLKKATQVMLHVHTRGRGVCGFYTREV
AESKVAQVNEFSRIHQHPLLCTMKQA
>Mature_105_residues
SQKTVHDQDNALLLETGNTKVAPPPRYQVLLLNDDYTPMDFVIVVLQQFFAMDLKKATQVMLHVHTRGRGVCGFYTREVA
ESKVAQVNEFSRIHQHPLLCTMKQA

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=83, Percent_Identity=59.0361445783133, Blast_Score=118, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_XYLF2 (B2I9Y0)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001829413.1
- ProteinModelPortal:   B2I9Y0
- SMR:   B2I9Y0
- GeneID:   6203970
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_0698
- HOGENOM:   HBG644923
- OMA:   VFPFGIA
- ProtClustDB:   PRK00033
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12100; Mature: 11969

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQKTVHDQDNALLLETGNTKVAPPPRYQVLLLNDDYTPMDFVIVVLQQFFAMDLKKATQ
CCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
VMLHVHTRGRGVCGFYTREVAESKVAQVNEFSRIHQHPLLCTMKQA
HHEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
>Mature Secondary Structure 
SQKTVHDQDNALLLETGNTKVAPPPRYQVLLLNDDYTPMDFVIVVLQQFFAMDLKKATQ
CCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
VMLHVHTRGRGVCGFYTREVAESKVAQVNEFSRIHQHPLLCTMKQA
HHEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA