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The map label for this gene is radA [H]

Identifier: 182681202

GI number: 182681202

Start: 763106

End: 764497

Strand: Reverse

Name: radA [H]

Synonym: XfasM23_0646

Alternate gene names: 182681202

Gene position: 764497-763106 (Counterclockwise)

Preceding gene: 182681204

Following gene: 182681192

Centisome position: 30.15

GC content: 56.68

Gene sequence:

>1392_bases
ATGACCAAAAACGCCGCAAGCAAAGCCAGGATTGCCTATGTCTGCACTGAATGCGGCACCGAATACAGCAAATGGCAGGG
ACAGTGCACCGAATGCGGCACCTGGAATTGCTTAAGCCAAATCACCCTCGGAAATGCAGGATCTGTCAAAAACCCAACCA
TGAAGCACGGCAATTGGACCGGTCAGCTCGACCCACCCAAGATCACCGCATTGAAGGACGTGCAACACAGCGAACAAGCA
CGCATCTCCACCGGCATTGGCGAGTTTGACCGCGTCCTAGGAGGCGGCCTGGTGGCAGGCGCGGTAGTCCTGATTGGTGG
CGATCCAGGCATCGGCAAATCCACATTGCTACTGCAAGCACTAGCACGGATGGCAAGCAACCTACCCACACTGTATGTGA
CGGGTGAAGAATCGCTGGCACAGGTCGCCGGGCGTGCGGTGCGCCTGGATCTGCCCCTGGAGGGCTTAAACGCACTCGCA
GAAACCGGCATTGAATCAATCCTGCAACACGCCAGCAGCGCACGGCCACGACTGATTGTCGCCGACTCAGTACAGACCCT
ATGGACCGAAGCACTGACCGCAGCACCCGGTTCAGTCAGCCAAGTACGAGAAAGCGCCGCACAGCTAGTGCGCTACGCCA
AAGAAACCGGCACAACCGTGTTCCTGGTTGGCCATGTCACCAAAGAAGGTGGCATCGCCGGCCCACGCGTACTGGAGCAC
ATGGTAGATGCCGTGCTGTATTTTGAAGGCGAAAGCGGTAGCCGTTTCCGTCTCCTGCGGGCATTCAAAAATCGCTTTGG
AGCAGTCAACGAACTAGGCGTCTTTGCGATGAGCGAAAAAGGCTTGAAAGAGGTCGCCAATCCATCAGCCATTTTTTTAT
CCGGCAGAAACAGCGACCAACCAGGCAGCTGTGTGATGGTCACGCGTGAGGGAACACGTCCTCTGATGGTCGAAGTACAA
GCACTCGTCGATACCTCGCCACTGTCCAACCCACGCCGGGTTACCGTCGGGCTGGAACAAAATCGGCTAGCAATGCTGTT
AGCCGTATTGCATCGTCACGGTAACGTCCTGGTTGGTGACCAAGACGTATTCATCAACATCGTTGGCGGCATCCGCGTTC
AAGAGACAGCCGCAGATCTACCTGTACTACTGGCGGTCCGGTCCTCGTTATGCAACCGGGCGCTGCCAGAAAAGACCATC
GCCTTCGGCGAAGTGGGTTTATCCGGTGAAATCCGCCCGGTCCCCAACGGCGAAGAGCGCCTCAGAGAAGCGGCAACACA
CGGCTTTAAGCACGCCATTGTGCCAAAAGCCAACGCACCCAAGAGTGCCATCAAGGACATGCAGATCATCGCCGTAGAAC
GCCTGGATCAGGCGCTGGAAGCAAGCTATTGA

Upstream 100 bases:

>100_bases
CTTAGGAGTTAATTTTAGTAACCAGCAATGACTGCATCCACATAGCGCGTGTAGGCATGCCAACCTATGCTGCATGTCGA
CCGATCACGAGGAAGAACAC

Downstream 100 bases:

>100_bases
AGATCACGTCTATGAAGACTGTCGTAAGGTAAGGCATCCCCATTGCGGAAACGCCTTCTTACTCGGACATACCGCTTAAC
CATGGACAACGCAACATCAC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MTKNAASKARIAYVCTECGTEYSKWQGQCTECGTWNCLSQITLGNAGSVKNPTMKHGNWTGQLDPPKITALKDVQHSEQA
RISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASNLPTLYVTGEESLAQVAGRAVRLDLPLEGLNALA
ETGIESILQHASSARPRLIVADSVQTLWTEALTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQPGSCVMVTREGTRPLMVEVQ
ALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTI
AFGEVGLSGEIRPVPNGEERLREAATHGFKHAIVPKANAPKSAIKDMQIIAVERLDQALEASY

Sequences:

>Translated_463_residues
MTKNAASKARIAYVCTECGTEYSKWQGQCTECGTWNCLSQITLGNAGSVKNPTMKHGNWTGQLDPPKITALKDVQHSEQA
RISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASNLPTLYVTGEESLAQVAGRAVRLDLPLEGLNALA
ETGIESILQHASSARPRLIVADSVQTLWTEALTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQPGSCVMVTREGTRPLMVEVQ
ALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTI
AFGEVGLSGEIRPVPNGEERLREAATHGFKHAIVPKANAPKSAIKDMQIIAVERLDQALEASY
>Mature_462_residues
TKNAASKARIAYVCTECGTEYSKWQGQCTECGTWNCLSQITLGNAGSVKNPTMKHGNWTGQLDPPKITALKDVQHSEQAR
ISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASNLPTLYVTGEESLAQVAGRAVRLDLPLEGLNALAE
TGIESILQHASSARPRLIVADSVQTLWTEALTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEHM
VDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQPGSCVMVTREGTRPLMVEVQA
LVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTIA
FGEVGLSGEIRPVPNGEERLREAATHGFKHAIVPKANAPKSAIKDMQIIAVERLDQALEASY

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=454, Percent_Identity=56.8281938325991, Blast_Score=527, Evalue=1e-151,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49370; Mature: 49239

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKNAASKARIAYVCTECGTEYSKWQGQCTECGTWNCLSQITLGNAGSVKNPTMKHGNWT
CCCCCCCCCCEEEEEHHHCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
GQLDPPKITALKDVQHSEQARISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQA
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHH
LARMASNLPTLYVTGEESLAQVAGRAVRLDLPLEGLNALAETGIESILQHASSARPRLIV
HHHHHHCCCEEEEECHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
ADSVQTLWTEALTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
ECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQ
HHHHEEEEECCCCCHHHHHHHHHHHCCCHHHHCEEEECHHHHHHHCCCCEEEEECCCCCC
PGSCVMVTREGTRPLMVEVQALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGD
CCCEEEEEECCCCCEEEEEEEHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECC
QDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTIAFGEVGLSGEIRPVPNGEER
CCEEEEEECCCEEEHHHCCCHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCCCCHHHH
LREAATHGFKHAIVPKANAPKSAIKDMQIIAVERLDQALEASY
HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKNAASKARIAYVCTECGTEYSKWQGQCTECGTWNCLSQITLGNAGSVKNPTMKHGNWT
CCCCCCCCCEEEEEHHHCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
GQLDPPKITALKDVQHSEQARISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQA
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHH
LARMASNLPTLYVTGEESLAQVAGRAVRLDLPLEGLNALAETGIESILQHASSARPRLIV
HHHHHHCCCEEEEECHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
ADSVQTLWTEALTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
ECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQ
HHHHEEEEECCCCCHHHHHHHHHHHCCCHHHHCEEEECHHHHHHHCCCCEEEEECCCCCC
PGSCVMVTREGTRPLMVEVQALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGD
CCCEEEEEECCCCCEEEEEEEHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECC
QDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTIAFGEVGLSGEIRPVPNGEER
CCEEEEEECCCEEEHHHCCCHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCCCCHHHH
LREAATHGFKHAIVPKANAPKSAIKDMQIIAVERLDQALEASY
HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]