| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is yfcB [C]
Identifier: 182681193
GI number: 182681193
Start: 753039
End: 753965
Strand: Direct
Name: yfcB [C]
Synonym: XfasM23_0637
Alternate gene names: 182681193
Gene position: 753039-753965 (Clockwise)
Preceding gene: 182681187
Following gene: 182681194
Centisome position: 29.7
GC content: 54.8
Gene sequence:
>927_bases ATGACTCCTGCTGCGGCCGATGAACTTCACACGATCGTTGACTTAATCCGCTACGGTGCTAGCCGTTTCAGTGAGGCTGG CTTGACCTTTGGTCACAGTTACGACAATGCGTTGGACGAGGCGACGCAACTGGTGTTGCATGCCTTGCATCTGCCGCCGG ATCTTGGCCCCGCCTATGGTCAGGCGCGTTTATTGCGTACTGAGAAGGAATGTGTTCTGGCGCTATTTGAGCGACGCGTG ACCGAGCGTGTGCCGGTTGCGTATTTGACGGGTGATGCTTGGTTTGCCGGGCTGAACTTTAAGAGCGATGCACGCGCACT GGTGCCACGCTCGCCGATTGCCGAGTTAATTCAGGCTGGTTTTGAGCCGTGGTTGGCAGGGCGTGACGTGCGTCATGCTC TGGACTTATGCACCGGCTCCGGGTGCATTGCGATTGCGATGGGTCACTACAACCCTCATTGGCGTGTGGATGGGTCTGAC ATCAGTGAGGATGCGCTGTCGTTAGCATTGGAAAATAAGGTGCGACTGTTGGCGCATAACGTCGAGTTGATCAAGTCTGA TGTGTTTGCTGGACTGGTTGGACGCCGTTACCAGTTGATTGTCAGCAATCCGCCTTATGTGACTGACGCCGAAACCGATG CACTGCCGCAGGAGTATGGTTACGAGCCAGAGCTGGGTTTGCGTGCTGGCCCGGATGGACTGAATTTGGTGCTGAAGATT TTGCGTGATGCTCCGGCTCATTTGGATGAGGAGGGCCTGTTGATCTGCGAGGTTGGCGAGTCTGAGCAACAGTTGGTACA GCTGTTGCCGCAGGTTGATTTTGCTTGGGTTGAATTCAAAGTCGGGCAAATGGGGGTCTTTGCGGTTGAATGCCGTGAGT TGATTGCTCATCATGACCGTATTGCTGCGCTTGCCGCTGAACGTTAA
Upstream 100 bases:
>100_bases CGGTGCTACGGTTGAACATGGTGGTTCCCACTGCAACGGATGCTCAATCGTAGCGCGGTTCCCTCTATAATCGTCGCCCG ACCTGATTTTGGCTGTTGCT
Downstream 100 bases:
>100_bases GGTGCTTGTTCATGGGGGCGAACACGTTTGGAAAGTTACTGGCTGTCACGACCTTCGGCGAATCGCATGGCCCTGCCATT GGCTGTGTGATTGATGGCTG
Product: N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MTPAAADELHTIVDLIRYGASRFSEAGLTFGHSYDNALDEATQLVLHALHLPPDLGPAYGQARLLRTEKECVLALFERRV TERVPVAYLTGDAWFAGLNFKSDARALVPRSPIAELIQAGFEPWLAGRDVRHALDLCTGSGCIAIAMGHYNPHWRVDGSD ISEDALSLALENKVRLLAHNVELIKSDVFAGLVGRRYQLIVSNPPYVTDAETDALPQEYGYEPELGLRAGPDGLNLVLKI LRDAPAHLDEEGLLICEVGESEQQLVQLLPQVDFAWVEFKVGQMGVFAVECRELIAHHDRIAALAAER
Sequences:
>Translated_308_residues MTPAAADELHTIVDLIRYGASRFSEAGLTFGHSYDNALDEATQLVLHALHLPPDLGPAYGQARLLRTEKECVLALFERRV TERVPVAYLTGDAWFAGLNFKSDARALVPRSPIAELIQAGFEPWLAGRDVRHALDLCTGSGCIAIAMGHYNPHWRVDGSD ISEDALSLALENKVRLLAHNVELIKSDVFAGLVGRRYQLIVSNPPYVTDAETDALPQEYGYEPELGLRAGPDGLNLVLKI LRDAPAHLDEEGLLICEVGESEQQLVQLLPQVDFAWVEFKVGQMGVFAVECRELIAHHDRIAALAAER >Mature_307_residues TPAAADELHTIVDLIRYGASRFSEAGLTFGHSYDNALDEATQLVLHALHLPPDLGPAYGQARLLRTEKECVLALFERRVT ERVPVAYLTGDAWFAGLNFKSDARALVPRSPIAELIQAGFEPWLAGRDVRHALDLCTGSGCIAIAMGHYNPHWRVDGSDI SEDALSLALENKVRLLAHNVELIKSDVFAGLVGRRYQLIVSNPPYVTDAETDALPQEYGYEPELGLRAGPDGLNLVLKIL RDAPAHLDEEGLLICEVGESEQQLVQLLPQVDFAWVEFKVGQMGVFAVECRELIAHHDRIAALAAER
Specific function: Unknown
COG id: COG2890
COG function: function code J; Methylase of polypeptide chain release factors
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI7705409, Length=276, Percent_Identity=28.6231884057971, Blast_Score=75, Evalue=7e-14, Organism=Escherichia coli, GI87082085, Length=299, Percent_Identity=48.8294314381271, Blast_Score=264, Evalue=6e-72, Organism=Escherichia coli, GI1787463, Length=210, Percent_Identity=30, Blast_Score=88, Evalue=7e-19, Organism=Drosophila melanogaster, GI24582226, Length=214, Percent_Identity=27.5700934579439, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR004556 - InterPro: IPR017127 - InterPro: IPR007848 [H]
Pfam domain/function: PF05175 MTS [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 33864; Mature: 33733
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPAAADELHTIVDLIRYGASRFSEAGLTFGHSYDNALDEATQLVLHALHLPPDLGPAYG CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC QARLLRTEKECVLALFERRVTERVPVAYLTGDAWFAGLNFKSDARALVPRSPIAELIQAG HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCCHHHHHHHCC FEPWLAGRDVRHALDLCTGSGCIAIAMGHYNPHWRVDGSDISEDALSLALENKVRLLAHN CCHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH VELIKSDVFAGLVGRRYQLIVSNPPYVTDAETDALPQEYGYEPELGLRAGPDGLNLVLKI HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHH LRDAPAHLDEEGLLICEVGESEQQLVQLLPQVDFAWVEFKVGQMGVFAVECRELIAHHDR HHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH IAALAAER HHHHHCCC >Mature Secondary Structure TPAAADELHTIVDLIRYGASRFSEAGLTFGHSYDNALDEATQLVLHALHLPPDLGPAYG CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC QARLLRTEKECVLALFERRVTERVPVAYLTGDAWFAGLNFKSDARALVPRSPIAELIQAG HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCCHHHHHHHCC FEPWLAGRDVRHALDLCTGSGCIAIAMGHYNPHWRVDGSDISEDALSLALENKVRLLAHN CCHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH VELIKSDVFAGLVGRRYQLIVSNPPYVTDAETDALPQEYGYEPELGLRAGPDGLNLVLKI HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHH LRDAPAHLDEEGLLICEVGESEQQLVQLLPQVDFAWVEFKVGQMGVFAVECRELIAHHDR HHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH IAALAAER HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]