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The map label for this gene is orn [H]

Identifier: 182681104

GI number: 182681104

Start: 648212

End: 648793

Strand: Direct

Name: orn [H]

Synonym: XfasM23_0546

Alternate gene names: 182681104

Gene position: 648212-648793 (Clockwise)

Preceding gene: 182681103

Following gene: 182681107

Centisome position: 25.56

GC content: 49.66

Gene sequence:

>582_bases
ATGGTTGCAGAGCTCCCCGTAGTCGAAAGTGACAGGCGGCTGATTTGGATCGATTTGGAAATGACAGGGCTGGATACCCA
TCGCGATTCGATCATTGAGATCGCTACGGTGGTGACGGATGCTCAGCTCAATGTGCTTGCTGAGGGTCCTGAGTTTGCCA
TCAGTCATCCTTTGAATGTGTTGGAAGCAATGGATGAGTGGAACCGTAATCAACACCGCCATTCTGGGTTATGGCAGCGT
GTGCTTAATAGTGAAATTCAGCATGCTCAGGCTGAAGCAAGCACGATTGCTTTTTTACAGCAATGGGTCAAAATCGGGGC
TTCACCGATGTGTGGTAATTCGATTTGTCAGGATCGACGTTTCTTGCATCGGCAGATGCCGTGTTTGGAGCGCTATTTCC
ATTACCGTAATCTGGATGTGTCCACGCTGAAGGAATTGGCTGGGTGTTGGTCCCCCAGTATCCTGGATGGTGTGGTCAAA
ACGTCCAGTCACACGGCGCTGAGCGATATCTATGATTCAATCGCGGAATTGCGTCATTACCGGAAATCAATGGGGACATT
CGCTGGTTTGTCAGTAGTCTGA

Upstream 100 bases:

>100_bases
GCCGATCCGCTGTTTGCATCAGGTTTATGGTGAATGATCGGGCGTATCATATTTGGTTCATATGATTGATATGGGTGATT
AAAGTGCAAAGGATGGTGAT

Downstream 100 bases:

>100_bases
CAGTCCGAGGAATGGCTTGTTCACTGGTCTGAGCATCTGCGCGAGGAGAGGGCAGATGCATGGACGTTAGAGCCATTGTT
GAGGTTGAAAGGAGCAGAGG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MVAELPVVESDRRLIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNVLEAMDEWNRNQHRHSGLWQR
VLNSEIQHAQAEASTIAFLQQWVKIGASPMCGNSICQDRRFLHRQMPCLERYFHYRNLDVSTLKELAGCWSPSILDGVVK
TSSHTALSDIYDSIAELRHYRKSMGTFAGLSVV

Sequences:

>Translated_193_residues
MVAELPVVESDRRLIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNVLEAMDEWNRNQHRHSGLWQR
VLNSEIQHAQAEASTIAFLQQWVKIGASPMCGNSICQDRRFLHRQMPCLERYFHYRNLDVSTLKELAGCWSPSILDGVVK
TSSHTALSDIYDSIAELRHYRKSMGTFAGLSVV
>Mature_193_residues
MVAELPVVESDRRLIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNVLEAMDEWNRNQHRHSGLWQR
VLNSEIQHAQAEASTIAFLQQWVKIGASPMCGNSICQDRRFLHRQMPCLERYFHYRNLDVSTLKELAGCWSPSILDGVVK
TSSHTALSDIYDSIAELRHYRKSMGTFAGLSVV

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=174, Percent_Identity=43.6781609195402, Blast_Score=158, Evalue=3e-39,
Organism=Escherichia coli, GI87082382, Length=173, Percent_Identity=58.9595375722543, Blast_Score=209, Evalue=1e-55,
Organism=Caenorhabditis elegans, GI17557752, Length=174, Percent_Identity=44.2528735632184, Blast_Score=157, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6323088, Length=192, Percent_Identity=35.9375, Blast_Score=103, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21355135, Length=175, Percent_Identity=44, Blast_Score=162, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 21886; Mature: 21886

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAELPVVESDRRLIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNV
CCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEECCCCHHHHCHHHH
LEAMDEWNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKIGASPMCGNSICQDRR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
FLHRQMPCLERYFHYRNLDVSTLKELAGCWSPSILDGVVKTSSHTALSDIYDSIAELRHY
HHHHHCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RKSMGTFAGLSVV
HHHHHHHCCCCCC
>Mature Secondary Structure
MVAELPVVESDRRLIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNV
CCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEECCCCHHHHCHHHH
LEAMDEWNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKIGASPMCGNSICQDRR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
FLHRQMPCLERYFHYRNLDVSTLKELAGCWSPSILDGVVKTSSHTALSDIYDSIAELRHY
HHHHHCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RKSMGTFAGLSVV
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]