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The map label for this gene is 182680891

Identifier: 182680891

GI number: 182680891

Start: 427252

End: 427932

Strand: Direct

Name: 182680891

Synonym: XfasM23_0329

Alternate gene names: NA

Gene position: 427252-427932 (Clockwise)

Preceding gene: 182680878

Following gene: 182680892

Centisome position: 16.85

GC content: 53.45

Gene sequence:

>681_bases
ATGTTTGTATCTATTCCTTCACGCAATCGACCAACCTGGCTTTGGGCGGTGCCATTGCTTTTTTTTGCTGTATTGATCGC
GTTCCTGTGGTCGATCAGTAGGCCAGGCCAAGAACGCAGTACGCTGTGGCTGGATTGGGGAGCGCTGTCAGGTGGCTTCT
CTCATGTGCCTGACATGTGGATTACCTCGCAGGGTGGCAGTGCGCTGCGCCTGTTTACAGCCCTGTTTCTCCATGCCGAT
TGGGCTCATTTGTTGGGTAATCTCGTGTTTCTGCTGATCTTTGGGTTACCAGCCGAACGTATCCTCGGGTCGTGGCGGTT
ACTGCTGCTGTTTCTGCTTGGTGGCGCACTGGCCAATTTGGCTGCGGTGTTGACCATCGGTAGCCCGAATCACGTGATTA
TTGGTGCTTCTGGTGCCGTTTCGGCGCTCATTGGTAGTTACCTGGCATTGTTTCCAGGAGCAAAGTTGGGAGTGGTGTTG
CCGTTAGGGTTGTTTCTGGAGTTTATCCGGGTTCCAGCTCCTTTCCTCATCGGGTTTTGGGCGTTGCTGCAGGTCGTATT
TGCTTACACTGGTCCGACATTGGTTATGGTTGCTTGGTCGGCCCATTTGGCAGGATTTGTATCTGGTGTTGTCTACGGAA
GCTTTGTACGCGCTGCAATTGTGCGGCGGCTGCGTCAGTGA

Upstream 100 bases:

>100_bases
TGCGGATCCTTGCTAAACAATAATGTCTCCATCGCTGTAAAGTACGCGGCTGTACGTATGCGGAATCAATGATTTTCCCG
AGTTGGTATTGGGCCAACCT

Downstream 100 bases:

>100_bases
TGTTGATTCTGAATGTGCTCGCATTATATGGTGACAATGTGTGTAACAGTACCTGCAAGATGTATCGCTAATACAAAATC
AAAATGAAGTGACATGAGAT

Product: rhomboid family protein

Products: NA

Alternate protein names: Integral Membrane Protein; Rhomboid-Like Protein; Rhomboid Family Transmembrane Protein; Integral Membrane Rhomboid Family Protein

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MFVSIPSRNRPTWLWAVPLLFFAVLIAFLWSISRPGQERSTLWLDWGALSGGFSHVPDMWITSQGGSALRLFTALFLHAD
WAHLLGNLVFLLIFGLPAERILGSWRLLLLFLLGGALANLAAVLTIGSPNHVIIGASGAVSALIGSYLALFPGAKLGVVL
PLGLFLEFIRVPAPFLIGFWALLQVVFAYTGPTLVMVAWSAHLAGFVSGVVYGSFVRAAIVRRLRQ

Sequences:

>Translated_226_residues
MFVSIPSRNRPTWLWAVPLLFFAVLIAFLWSISRPGQERSTLWLDWGALSGGFSHVPDMWITSQGGSALRLFTALFLHAD
WAHLLGNLVFLLIFGLPAERILGSWRLLLLFLLGGALANLAAVLTIGSPNHVIIGASGAVSALIGSYLALFPGAKLGVVL
PLGLFLEFIRVPAPFLIGFWALLQVVFAYTGPTLVMVAWSAHLAGFVSGVVYGSFVRAAIVRRLRQ
>Mature_226_residues
MFVSIPSRNRPTWLWAVPLLFFAVLIAFLWSISRPGQERSTLWLDWGALSGGFSHVPDMWITSQGGSALRLFTALFLHAD
WAHLLGNLVFLLIFGLPAERILGSWRLLLLFLLGGALANLAAVLTIGSPNHVIIGASGAVSALIGSYLALFPGAKLGVVL
PLGLFLEFIRVPAPFLIGFWALLQVVFAYTGPTLVMVAWSAHLAGFVSGVVYGSFVRAAIVRRLRQ

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24523; Mature: 24523

Theoretical pI: Translated: 11.84; Mature: 11.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVSIPSRNRPTWLWAVPLLFFAVLIAFLWSISRPGQERSTLWLDWGALSGGFSHVPDMW
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCE
ITSQGGSALRLFTALFLHADWAHLLGNLVFLLIFGLPAERILGSWRLLLLFLLGGALANL
EECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AAVLTIGSPNHVIIGASGAVSALIGSYLALFPGAKLGVVLPLGLFLEFIRVPAPFLIGFW
HHHEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
ALLQVVFAYTGPTLVMVAWSAHLAGFVSGVVYGSFVRAAIVRRLRQ
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFVSIPSRNRPTWLWAVPLLFFAVLIAFLWSISRPGQERSTLWLDWGALSGGFSHVPDMW
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCE
ITSQGGSALRLFTALFLHADWAHLLGNLVFLLIFGLPAERILGSWRLLLLFLLGGALANL
EECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AAVLTIGSPNHVIIGASGAVSALIGSYLALFPGAKLGVVLPLGLFLEFIRVPAPFLIGFW
HHHEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
ALLQVVFAYTGPTLVMVAWSAHLAGFVSGVVYGSFVRAAIVRRLRQ
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA