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The map label for this gene is ytfH [C]

Identifier: 182680755

GI number: 182680755

Start: 251273

End: 251707

Strand: Reverse

Name: ytfH [C]

Synonym: XfasM23_0184

Alternate gene names: 182680755

Gene position: 251707-251273 (Counterclockwise)

Preceding gene: 182680757

Following gene: 182680725

Centisome position: 9.93

GC content: 51.03

Gene sequence:

>435_bases
ATGAATATGTTTGCTTCTATCGCTTCCTCAGCCCCTCCACCTGGATGGGAAAATCTCCCGTTCGACGCGACAAAATGCCA
AGTGCGCGATGTACTGGATCATATAGGCGATAAGTGGTCGCTCCTGATTTTATTAACTCTAGTGCCCGGACCAACACGTT
TCAGCGCTATCCAGCGTGCCGTACCTGACATCTCCAAACGGATGCTCACGCAAACTCTACGGCATCTTGAGCGTAATGGA
ATGATTGGTCGCACAGTCTATCCAACCAAACCACCAAGAGTAGAGTATGCGCTCGCACCTCTAGGCGAAAGTCTGTTGGT
ACCTGTGATGCATTTACTTAAATGGGCAAGCACACACCATGACGAAGTGCGCAGTGCACGCGACCGTTTCGATCACGCGC
AACAAGGTGGCCTGGCAATAGCCAGCCGGATTTAA

Upstream 100 bases:

>100_bases
GCTAAGAGGATATTTCAAAATATCACGTTTATTGTCGAGACTATGATTTTTTCGCAAGAAGAAATTTTTACAGTCAAGGT
AATTTTTTTAGGCCCCCATC

Downstream 100 bases:

>100_bases
AGCATCACCTGCGCTCTATCCAAAAGAGGTTATCAATCGGTGTTGTAAGCAGATGATGGCAACGAGTAATGCGCTGCCAT
ACATGCATAAACCTTATATG

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MNMFASIASSAPPPGWENLPFDATKCQVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRAVPDISKRMLTQTLRHLERNG
MIGRTVYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHHDEVRSARDRFDHAQQGGLAIASRI

Sequences:

>Translated_144_residues
MNMFASIASSAPPPGWENLPFDATKCQVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRAVPDISKRMLTQTLRHLERNG
MIGRTVYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHHDEVRSARDRFDHAQQGGLAIASRI
>Mature_144_residues
MNMFASIASSAPPPGWENLPFDATKCQVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRAVPDISKRMLTQTLRHLERNG
MIGRTVYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHHDEVRSARDRFDHAQQGGLAIASRI

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=106, Percent_Identity=41.5094339622642, Blast_Score=94, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 16085; Mature: 16085

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMFASIASSAPPPGWENLPFDATKCQVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRA
CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
VPDISKRMLTQTLRHLERNGMIGRTVYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHCCCCHHHHHHHHHHHHHHHCCH
DEVRSARDRFDHAQQGGLAIASRI
HHHHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure
MNMFASIASSAPPPGWENLPFDATKCQVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRA
CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
VPDISKRMLTQTLRHLERNGMIGRTVYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHCCCCHHHHHHHHHHHHHHHCCH
DEVRSARDRFDHAQQGGLAIASRI
HHHHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]