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The map label for this gene is yebA [H]

Identifier: 182680695

GI number: 182680695

Start: 167597

End: 169012

Strand: Reverse

Name: yebA [H]

Synonym: XfasM23_0124

Alternate gene names: 182680695

Gene position: 169012-167597 (Counterclockwise)

Preceding gene: 182680698

Following gene: 182680694

Centisome position: 6.67

GC content: 49.22

Gene sequence:

>1416_bases
ATGCAAAATGCCGAACATAGGCACACTCACAAACAACGTATACGTGAACGACTCCATGTCCTACATGTTTCCACCCTACA
TCACAAGCTCAAGCATACGTTTCCTGCTGCGTTCAACCAACGCTGGACACCACGCCATTGGATCCACATGGCACTATTCG
CCATGATAGGCGCATTAATTGCCACAATCATCCCAGGCTTATCTAACAACAGCCCACCCACCCAGCTATCAAGCCTAGCA
ACATTAGCACTCCCCCTCCCGCCACAATACACATCAACGGCGGACACATGGCGAATGGTGACAATTAAACCCGGGCAAAC
GCTAAGCAGCATATTCAACGAACTCAAGCTATCCAGTAACGACATGGAACGCGTGCTGAATTATGCCGATCTACGTAAAG
TACTCACCCGACTCAGTCCAGGCGATGAAATCTCTTTCGATATACCGAACGACGGTCAATTACGCGGAATGCGTTTTAAT
CGTGACGAAAAACACCGCGTAGAACTGACTATTGATGACAACACCATCCATCAACAGGTTAGCCAACGCCAGACCAGCAC
CCGTACCGTCATTGCTAGTGGCGAGATCAAGAGTTCGCTATGGATCGCTGCACGCGAAGCAGGTTTATCACCTGTAGATG
TGATCACGCTGACCGATGAAATTTTCAAATACGATATTGACTTCGACAAAGATTTGCAGACTGGCGACCGCTTCAGTGTG
GTGATGGATGAAACTTGGCGAGAAGGTGAGCGCTTACCTGACGCCAAGATATTGGCCGCCACCTTTAACACTGGAGGGAA
AATCTATTCAGGCATACGCTTTATGCGCGACGGCAAAGTCGAATACTTCGATAAGGAAGGCAGACCGCTGAAGAAAAGCT
TCATTCGTATGCCAATCTCATATGCACGGCTTAGCTCCACCTTCGGCTTACGCCGCCACCCTATTCTAGGCACAATGCGC
ATGCATAAAGGTGTGGATTATGCCGCCGCAACCGGTACCCCAATTATGGCCGCGGGGGATGCACGCGTACAGTTTATCGG
CCAACAGCGCGGATACGGCAATGTAGTGATCCTCAATCACGGAAAAGGGTACAGGACACTATATGGACACATGTCGCGCT
TTGGAAAAATCAAAGCAGGCCAAAAGATTAACCAAGGGACGGTCATAGGCTACGTCGGCATGACCGGCTTGGCCACTGGG
CCACATCTACATTACGAATTTCAAGTGAACGGCCAGCATCGCAACCCACTGTCAATCACGATGCCACCACCAGAACCTTT
ACGCGGTAAAGATCTAATTGCATTCCGCACTCAAACAGCCCCGCTAATCGCACAAATTCAACAATACGAAAAACGATTCT
ACGCAATAACAAACAAACACGACTCCAAATCTACGGAAAAAAGTACACGTGGCTGA

Upstream 100 bases:

>100_bases
TTACGAATGAGGTCAATGGTTTGACGAGTCAGGGATAAAATGTCTATGTTAACCCTGCTTGAGCTTAATTTGCAGATATC
TTTTTTAAGGAAATTACATA

Downstream 100 bases:

>100_bases
AACACACTGACTTCAAGACCAAAAAATAAGGGCAACGTAAACCACTTTCAGCTCATTTCCTGTATGCCTGTGCATGATGA
TCACTGCAATCCAAATCCAG

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MQNAEHRHTHKQRIRERLHVLHVSTLHHKLKHTFPAAFNQRWTPRHWIHMALFAMIGALIATIIPGLSNNSPPTQLSSLA
TLALPLPPQYTSTADTWRMVTIKPGQTLSSIFNELKLSSNDMERVLNYADLRKVLTRLSPGDEISFDIPNDGQLRGMRFN
RDEKHRVELTIDDNTIHQQVSQRQTSTRTVIASGEIKSSLWIAAREAGLSPVDVITLTDEIFKYDIDFDKDLQTGDRFSV
VMDETWREGERLPDAKILAATFNTGGKIYSGIRFMRDGKVEYFDKEGRPLKKSFIRMPISYARLSSTFGLRRHPILGTMR
MHKGVDYAAATGTPIMAAGDARVQFIGQQRGYGNVVILNHGKGYRTLYGHMSRFGKIKAGQKINQGTVIGYVGMTGLATG
PHLHYEFQVNGQHRNPLSITMPPPEPLRGKDLIAFRTQTAPLIAQIQQYEKRFYAITNKHDSKSTEKSTRG

Sequences:

>Translated_471_residues
MQNAEHRHTHKQRIRERLHVLHVSTLHHKLKHTFPAAFNQRWTPRHWIHMALFAMIGALIATIIPGLSNNSPPTQLSSLA
TLALPLPPQYTSTADTWRMVTIKPGQTLSSIFNELKLSSNDMERVLNYADLRKVLTRLSPGDEISFDIPNDGQLRGMRFN
RDEKHRVELTIDDNTIHQQVSQRQTSTRTVIASGEIKSSLWIAAREAGLSPVDVITLTDEIFKYDIDFDKDLQTGDRFSV
VMDETWREGERLPDAKILAATFNTGGKIYSGIRFMRDGKVEYFDKEGRPLKKSFIRMPISYARLSSTFGLRRHPILGTMR
MHKGVDYAAATGTPIMAAGDARVQFIGQQRGYGNVVILNHGKGYRTLYGHMSRFGKIKAGQKINQGTVIGYVGMTGLATG
PHLHYEFQVNGQHRNPLSITMPPPEPLRGKDLIAFRTQTAPLIAQIQQYEKRFYAITNKHDSKSTEKSTRG
>Mature_471_residues
MQNAEHRHTHKQRIRERLHVLHVSTLHHKLKHTFPAAFNQRWTPRHWIHMALFAMIGALIATIIPGLSNNSPPTQLSSLA
TLALPLPPQYTSTADTWRMVTIKPGQTLSSIFNELKLSSNDMERVLNYADLRKVLTRLSPGDEISFDIPNDGQLRGMRFN
RDEKHRVELTIDDNTIHQQVSQRQTSTRTVIASGEIKSSLWIAAREAGLSPVDVITLTDEIFKYDIDFDKDLQTGDRFSV
VMDETWREGERLPDAKILAATFNTGGKIYSGIRFMRDGKVEYFDKEGRPLKKSFIRMPISYARLSSTFGLRRHPILGTMR
MHKGVDYAAATGTPIMAAGDARVQFIGQQRGYGNVVILNHGKGYRTLYGHMSRFGKIKAGQKINQGTVIGYVGMTGLATG
PHLHYEFQVNGQHRNPLSITMPPPEPLRGKDLIAFRTQTAPLIAQIQQYEKRFYAITNKHDSKSTEKSTRG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=352, Percent_Identity=32.9545454545455, Blast_Score=169, Evalue=4e-43,
Organism=Escherichia coli, GI87082174, Length=103, Percent_Identity=35.9223300970874, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 53267; Mature: 53267

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNAEHRHTHKQRIRERLHVLHVSTLHHKLKHTFPAAFNQRWTPRHWIHMALFAMIGALI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHH
ATIIPGLSNNSPPTQLSSLATLALPLPPQYTSTADTWRMVTIKPGQTLSSIFNELKLSSN
HHHCCCCCCCCCCHHHHHHHEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCH
DMERVLNYADLRKVLTRLSPGDEISFDIPNDGQLRGMRFNRDEKHRVELTIDDNTIHQQV
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEECEECCCCCCEEEEEEECCCHHHHHH
SQRQTSTRTVIASGEIKSSLWIAAREAGLSPVDVITLTDEIFKYDIDFDKDLQTGDRFSV
HHHHCCCEEEEECCCCCCCEEEEEHHCCCCCEEEEEEEHHHHEECCCCCCCCCCCCCEEE
VMDETWREGERLPDAKILAATFNTGGKIYSGIRFMRDGKVEYFDKEGRPLKKSFIRMPIS
EECCHHHCCCCCCCCEEEEEEECCCCHHHHCEEEEECCCEEEECCCCCHHHHHHHHCCHH
YARLSSTFGLRRHPILGTMRMHKGVDYAAATGTPIMAAGDARVQFIGQQRGYGNVVILNH
HHHHHHHCCCCCCCCEEHHHHHCCCCEEECCCCCEEEECCCEEEEEECCCCCCCEEEEEC
GKGYRTLYGHMSRFGKIKAGQKINQGTVIGYVGMTGLATGPHLHYEFQVNGQHRNPLSIT
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEE
MPPPEPLRGKDLIAFRTQTAPLIAQIQQYEKRFYAITNKHDSKSTEKSTRG
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MQNAEHRHTHKQRIRERLHVLHVSTLHHKLKHTFPAAFNQRWTPRHWIHMALFAMIGALI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHH
ATIIPGLSNNSPPTQLSSLATLALPLPPQYTSTADTWRMVTIKPGQTLSSIFNELKLSSN
HHHCCCCCCCCCCHHHHHHHEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCH
DMERVLNYADLRKVLTRLSPGDEISFDIPNDGQLRGMRFNRDEKHRVELTIDDNTIHQQV
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEECEECCCCCCEEEEEEECCCHHHHHH
SQRQTSTRTVIASGEIKSSLWIAAREAGLSPVDVITLTDEIFKYDIDFDKDLQTGDRFSV
HHHHCCCEEEEECCCCCCCEEEEEHHCCCCCEEEEEEEHHHHEECCCCCCCCCCCCCEEE
VMDETWREGERLPDAKILAATFNTGGKIYSGIRFMRDGKVEYFDKEGRPLKKSFIRMPIS
EECCHHHCCCCCCCCEEEEEEECCCCHHHHCEEEEECCCEEEECCCCCHHHHHHHHCCHH
YARLSSTFGLRRHPILGTMRMHKGVDYAAATGTPIMAAGDARVQFIGQQRGYGNVVILNH
HHHHHHHCCCCCCCCEEHHHHHCCCCEEECCCCCEEEECCCEEEEEECCCCCCCEEEEEC
GKGYRTLYGHMSRFGKIKAGQKINQGTVIGYVGMTGLATGPHLHYEFQVNGQHRNPLSIT
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEE
MPPPEPLRGKDLIAFRTQTAPLIAQIQQYEKRFYAITNKHDSKSTEKSTRG
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]