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The map label for this gene is exbD2 [H]

Identifier: 182680584

GI number: 182680584

Start: 12573

End: 12983

Strand: Direct

Name: exbD2 [H]

Synonym: XfasM23_0012

Alternate gene names: 182680584

Gene position: 12573-12983 (Clockwise)

Preceding gene: 182680583

Following gene: 182680585

Centisome position: 0.5

GC content: 45.01

Gene sequence:

>411_bases
ATGGCTTTTAGTAGTGGTAGCAACCGTGGCCCGATGGCAGATATCAATGTCACTCCTCTTGTGGATGTGATGTTGGTGTT
ATTAATTATCTTCATCGTTACTGCGCCGATCATGACCTATCCAATTGCCGTGGATTTACCTCAGAGAGTGCTGAATCCGC
CACCGATGGATCATGAACCGCCGCCGCCAATTCAATTGAAGATTGATGCTAGCAATCAAATCTATTGGAACAACACTCTG
GTTGCGGTGAGCCAATTGCAGCAGCGTATGGAGGAAGTAGTGCAGAAAGATCCAACCAACCAACCGCAATTGCAGATTGA
TGCTAATCCAGACTCAGAATATGAAGTGATTGCTAAAGTCCTAGCTGCTGCTAAAAACGCAGATATGAAGAAGATTGGAT
TTCATGAGTAG

Upstream 100 bases:

>100_bases
CACTAAGATGAGTAAAATCAGCAAGATCATCAAGGTCGCCCAAGGGCAAGGGATTATGGACATTGGTTTTATTGCAACTA
AAGAAAAGGAGTAGCAAGCC

Downstream 100 bases:

>100_bases
GTAAATCAATCGCATCTGTACTACATCGCATGATTTATCCAATCCCGTAGGATGGTCACCCTAAGAACGCCACTTTGTGT
GGCGTTTTTTTTAATCTGTT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAFSSGSNRGPMADINVTPLVDVMLVLLIIFIVTAPIMTYPIAVDLPQRVLNPPPMDHEPPPPIQLKIDASNQIYWNNTL
VAVSQLQQRMEEVVQKDPTNQPQLQIDANPDSEYEVIAKVLAAAKNADMKKIGFHE

Sequences:

>Translated_136_residues
MAFSSGSNRGPMADINVTPLVDVMLVLLIIFIVTAPIMTYPIAVDLPQRVLNPPPMDHEPPPPIQLKIDASNQIYWNNTL
VAVSQLQQRMEEVVQKDPTNQPQLQIDANPDSEYEVIAKVLAAAKNADMKKIGFHE
>Mature_135_residues
AFSSGSNRGPMADINVTPLVDVMLVLLIIFIVTAPIMTYPIAVDLPQRVLNPPPMDHEPPPPIQLKIDASNQIYWNNTLV
AVSQLQQRMEEVVQKDPTNQPQLQIDANPDSEYEVIAKVLAAAKNADMKKIGFHE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=129, Percent_Identity=35.6589147286822, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15085; Mature: 14953

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFSSGSNRGPMADINVTPLVDVMLVLLIIFIVTAPIMTYPIAVDLPQRVLNPPPMDHEP
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHCCCCCCCCCC
PPPIQLKIDASNQIYWNNTLVAVSQLQQRMEEVVQKDPTNQPQLQIDANPDSEYEVIAKV
CCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHH
LAAAKNADMKKIGFHE
HHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AFSSGSNRGPMADINVTPLVDVMLVLLIIFIVTAPIMTYPIAVDLPQRVLNPPPMDHEP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHCCCCCCCCCC
PPPIQLKIDASNQIYWNNTLVAVSQLQQRMEEVVQKDPTNQPQLQIDANPDSEYEVIAKV
CCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHH
LAAAKNADMKKIGFHE
HHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]