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The map label for this gene is exbD1 [H]

Identifier: 182680583

GI number: 182680583

Start: 12156

End: 12566

Strand: Direct

Name: exbD1 [H]

Synonym: XfasM23_0011

Alternate gene names: 182680583

Gene position: 12156-12566 (Clockwise)

Preceding gene: 182680582

Following gene: 182680584

Centisome position: 0.48

GC content: 42.34

Gene sequence:

>411_bases
ATGGCTTTTAGTAATGGAAACAGCAATGGTCCGATGGCCGATATCAACGTTACGCCACTTGTGGACGTGATGTTGGTGCT
GCTGATTATTTTCATAATTACGGCACCGTTGATGTCTCATAAGGTTAAGGTGGAGCTGCCTCAGGCTAATTTGGTCAATA
AGAACAATGAAGAAAAACGTTCTAATCCGATTACCTTAGCTGTTAAAGAAGATGGGTCGCTTTATTGGAACGATATACAA
ATCAGCGAAAGTGAATTAGAACAGCGTTTTTCGCTTGCCGCGCAACAAACTCCTCTCAACTTACGTGGTGATCGCACCAC
TAAGATGAGTAAAATCAGCAAGATCATCAAGGTCGCCCAAGGGCAAGGGATTATGGACATTGGTTTTATTGCAACTAAAG
AAAAGGAGTAG

Upstream 100 bases:

>100_bases
ATGATCTGCATGACTTCTTTGCTACGGGTTCGCGTGTACGATGATCCTGTACCCCGCTTTCATAAAGCAATCATCCCAAT
GCGGTTAGAGGGAGTCCGTT

Downstream 100 bases:

>100_bases
CAAGCCATGGCTTTTAGTAGTGGTAGCAACCGTGGCCCGATGGCAGATATCAATGTCACTCCTCTTGTGGATGTGATGTT
GGTGTTATTAATTATCTTCA

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAFSNGNSNGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPQANLVNKNNEEKRSNPITLAVKEDGSLYWNDIQ
ISESELEQRFSLAAQQTPLNLRGDRTTKMSKISKIIKVAQGQGIMDIGFIATKEKE

Sequences:

>Translated_136_residues
MAFSNGNSNGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPQANLVNKNNEEKRSNPITLAVKEDGSLYWNDIQ
ISESELEQRFSLAAQQTPLNLRGDRTTKMSKISKIIKVAQGQGIMDIGFIATKEKE
>Mature_135_residues
AFSNGNSNGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPQANLVNKNNEEKRSNPITLAVKEDGSLYWNDIQI
SESELEQRFSLAAQQTPLNLRGDRTTKMSKISKIIKVAQGQGIMDIGFIATKEKE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=130, Percent_Identity=36.9230769230769, Blast_Score=79, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15068; Mature: 14937

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFSNGNSNGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPQANLVNKNNEEKR
CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
SNPITLAVKEDGSLYWNDIQISESELEQRFSLAAQQTPLNLRGDRTTKMSKISKIIKVAQ
CCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
GQGIMDIGFIATKEKE
CCCCEEECEEEECCCC
>Mature Secondary Structure 
AFSNGNSNGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPQANLVNKNNEEKR
CCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
SNPITLAVKEDGSLYWNDIQISESELEQRFSLAAQQTPLNLRGDRTTKMSKISKIIKVAQ
CCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
GQGIMDIGFIATKEKE
CCCCEEECEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]