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The map label for this gene is yhfW [H]

Identifier: 170756554

GI number: 170756554

Start: 1667706

End: 1669271

Strand: Reverse

Name: yhfW [H]

Synonym: CLD_3048

Alternate gene names: 170756554

Gene position: 1669271-1667706 (Counterclockwise)

Preceding gene: 170757685

Following gene: 170755109

Centisome position: 42.17

GC content: 31.74

Gene sequence:

>1566_bases
ATGAACAAATCATGTAATACCTGTCAAAATTTTGAAGGCGTTTTTAAATCTTATTGGTTAGACTCTACTCCAGAAACAAA
CTATCCTGTTTTAAATGAAGATATCACTGTGGATATAACTGTTATCGGTGCTGGTATAGTAGGAATTACCACTTCTCTTC
TTCTAAAAAAAGAAGGTTTTAAAGTTGCGCTAATAGATGCAGATAGAATATGCCAAGGTACTTCTGGCCATACTACGGCC
AAAATAACCTCTCAACATCATTTAATATACGATAAGTTAATTACTGAAATGGGAATAGAAAAGGCACAAAAGTATGCAGA
TGCCAATGAATTTGCAATAAATTTTATAGAGAATATAGTTAATGAATATTCTATAGACTGTGATTTTCACAGACTCCCGG
CTTATATTTATACTGAAGATGAAAACTTTGTATCTTCAATAAAAAAAGAAGCAGAGGCAGCTTTAAGCTTAGGATTAAAA
GCAAAATTTTTAGATAGTATTCCTATTTCTTTACCTGTAAAAGCTGCTTTATGTTTTGAAAATCAAGCTCAATTTCATCC
ACGGAAATATTTATTAGACCTAGCCAATAAAATACCCGGAGATGGAAGTCATATATTTGAAAATACAAAAATAGTAGACA
TTGATAGCGATAATAGCTGCGTATGTACTACTAATAATGAGAAGAAAATATCTTCTTCAAAAATTATTGTAGCTTCACAC
TTTCCTTGCTATGATGCTTTAGGATTATACTTTGCAAGACTTTCTCCAAAAAAATCTTATGTTTTAGCTGTAGAAACTAA
GGAAAACTTTCCCAAAGGTGTATTTATAAATGCTGAAGAACCTGGACGCTCTCTTCGTTGTCAAAATTATAAGGGCAGCA
AAATTGTTCTTGTAGGCGGTGAGGGGCATAAAACAGCTCATGGAGAAAACACGTTAACTCATTATAAAAATTTAAAATCC
TTTGCAGAAAAAACTTTTGATATAGATAATATATTATACTATTGGTCAACTCAAGATTACATGACAGTAGATGGAGTACC
TTACATAGGACATTTAACCTCTTCTATTAAAAATATTTATGTAGCTACAGGTTTTGGAGAATGGGGAATGACAAATGGTA
CTGCTGCTGCAATATTACTAAAGGATCTTATTACCAATAAGGAAAATCCCTGGAAGGATTTATATAATCCATCAAGACCT
ATGACCTCCAGTTCCATTAAAAACTTATTTACTTTAAATATAGATGTAGCCAAAGAGCTTGTTAAAGGTAAACTACAAGG
TGCACCTAATACATTAGACCTTAATAATGACGAAGGAAAAGTTGTTACAATTGATGGACGAAAGTATGGAGCTTATAAAG
ATAATGACGGTGCTATTCATTTAGTAGATAATACTTGTACTCATCTAGGTTGTGAACTTAAATGGAATGATGCAGAAAAA
TCTTGGGATTGCCCTTGTCATGGTTCTAGATTTAGCTATGAAGGTGATATTATTGAAGGACCTGCTATTAATAAATTAAA
TCATTATAAAGAAGATCCTAATAGAATTGATCCAAATATTTTATAA

Upstream 100 bases:

>100_bases
CATTAGCAACTTAAATCTTAGAATATTTCTTTATTAATTACAAAAGCTAACATATATATTTAGATCTATGTATTATTAGT
TAAAGAAAGGATAGATATTG

Downstream 100 bases:

>100_bases
TATTATAAAAATGATTCTAAGATTAAGATAGAGAGCTATTTTTCATAATAGAACTCCATCTAAACCTTAGAATCATTTAA
TAATTACTTAATTTATTCTA

Product: oxidoreductase, FAD dependent

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MNKSCNTCQNFEGVFKSYWLDSTPETNYPVLNEDITVDITVIGAGIVGITTSLLLKKEGFKVALIDADRICQGTSGHTTA
KITSQHHLIYDKLITEMGIEKAQKYADANEFAINFIENIVNEYSIDCDFHRLPAYIYTEDENFVSSIKKEAEAALSLGLK
AKFLDSIPISLPVKAALCFENQAQFHPRKYLLDLANKIPGDGSHIFENTKIVDIDSDNSCVCTTNNEKKISSSKIIVASH
FPCYDALGLYFARLSPKKSYVLAVETKENFPKGVFINAEEPGRSLRCQNYKGSKIVLVGGEGHKTAHGENTLTHYKNLKS
FAEKTFDIDNILYYWSTQDYMTVDGVPYIGHLTSSIKNIYVATGFGEWGMTNGTAAAILLKDLITNKENPWKDLYNPSRP
MTSSSIKNLFTLNIDVAKELVKGKLQGAPNTLDLNNDEGKVVTIDGRKYGAYKDNDGAIHLVDNTCTHLGCELKWNDAEK
SWDCPCHGSRFSYEGDIIEGPAINKLNHYKEDPNRIDPNIL

Sequences:

>Translated_521_residues
MNKSCNTCQNFEGVFKSYWLDSTPETNYPVLNEDITVDITVIGAGIVGITTSLLLKKEGFKVALIDADRICQGTSGHTTA
KITSQHHLIYDKLITEMGIEKAQKYADANEFAINFIENIVNEYSIDCDFHRLPAYIYTEDENFVSSIKKEAEAALSLGLK
AKFLDSIPISLPVKAALCFENQAQFHPRKYLLDLANKIPGDGSHIFENTKIVDIDSDNSCVCTTNNEKKISSSKIIVASH
FPCYDALGLYFARLSPKKSYVLAVETKENFPKGVFINAEEPGRSLRCQNYKGSKIVLVGGEGHKTAHGENTLTHYKNLKS
FAEKTFDIDNILYYWSTQDYMTVDGVPYIGHLTSSIKNIYVATGFGEWGMTNGTAAAILLKDLITNKENPWKDLYNPSRP
MTSSSIKNLFTLNIDVAKELVKGKLQGAPNTLDLNNDEGKVVTIDGRKYGAYKDNDGAIHLVDNTCTHLGCELKWNDAEK
SWDCPCHGSRFSYEGDIIEGPAINKLNHYKEDPNRIDPNIL
>Mature_521_residues
MNKSCNTCQNFEGVFKSYWLDSTPETNYPVLNEDITVDITVIGAGIVGITTSLLLKKEGFKVALIDADRICQGTSGHTTA
KITSQHHLIYDKLITEMGIEKAQKYADANEFAINFIENIVNEYSIDCDFHRLPAYIYTEDENFVSSIKKEAEAALSLGLK
AKFLDSIPISLPVKAALCFENQAQFHPRKYLLDLANKIPGDGSHIFENTKIVDIDSDNSCVCTTNNEKKISSSKIIVASH
FPCYDALGLYFARLSPKKSYVLAVETKENFPKGVFINAEEPGRSLRCQNYKGSKIVLVGGEGHKTAHGENTLTHYKNLKS
FAEKTFDIDNILYYWSTQDYMTVDGVPYIGHLTSSIKNIYVATGFGEWGMTNGTAAAILLKDLITNKENPWKDLYNPSRP
MTSSSIKNLFTLNIDVAKELVKGKLQGAPNTLDLNNDEGKVVTIDGRKYGAYKDNDGAIHLVDNTCTHLGCELKWNDAEK
SWDCPCHGSRFSYEGDIIEGPAINKLNHYKEDPNRIDPNIL

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=382, Percent_Identity=23.8219895287958, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 58056; Mature: 58056

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSCNTCQNFEGVFKSYWLDSTPETNYPVLNEDITVDITVIGAGIVGITTSLLLKKEGF
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEECCHHHHHHHHHEECCCC
KVALIDADRICQGTSGHTTAKITSQHHLIYDKLITEMGIEKAQKYADANEFAINFIENIV
EEEEEEHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
NEYSIDCDFHRLPAYIYTEDENFVSSIKKEAEAALSLGLKAKFLDSIPISLPVKAALCFE
HHCCCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCEEEEEEC
NQAQFHPRKYLLDLANKIPGDGSHIFENTKIVDIDSDNSCVCTTNNEKKISSSKIIVASH
CCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCEEEECCCCCCCCCCEEEEEEC
FPCYDALGLYFARLSPKKSYVLAVETKENFPKGVFINAEEPGRSLRCQNYKGSKIVLVGG
CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCEECCCCCCEEEEECC
EGHKTAHGENTLTHYKNLKSFAEKTFDIDNILYYWSTQDYMTVDGVPYIGHLTSSIKNIY
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCHHHHHHHCCCEEE
VATGFGEWGMTNGTAAAILLKDLITNKENPWKDLYNPSRPMTSSSIKNLFTLNIDVAKEL
EEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHCEEEEEEHHHHHHH
VKGKLQGAPNTLDLNNDEGKVVTIDGRKYGAYKDNDGAIHLVDNTCTHLGCELKWNDAEK
HHHHHCCCCCEEECCCCCCEEEEECCCEECCEECCCCEEEEECCCCCCCCCEEEECCCCC
SWDCPCHGSRFSYEGDIIEGPAINKLNHYKEDPNRIDPNIL
CCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNKSCNTCQNFEGVFKSYWLDSTPETNYPVLNEDITVDITVIGAGIVGITTSLLLKKEGF
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEECCHHHHHHHHHEECCCC
KVALIDADRICQGTSGHTTAKITSQHHLIYDKLITEMGIEKAQKYADANEFAINFIENIV
EEEEEEHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
NEYSIDCDFHRLPAYIYTEDENFVSSIKKEAEAALSLGLKAKFLDSIPISLPVKAALCFE
HHCCCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCEEEEEEC
NQAQFHPRKYLLDLANKIPGDGSHIFENTKIVDIDSDNSCVCTTNNEKKISSSKIIVASH
CCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCEEEECCCCCCCCCCEEEEEEC
FPCYDALGLYFARLSPKKSYVLAVETKENFPKGVFINAEEPGRSLRCQNYKGSKIVLVGG
CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCEECCCCCCEEEEECC
EGHKTAHGENTLTHYKNLKSFAEKTFDIDNILYYWSTQDYMTVDGVPYIGHLTSSIKNIY
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCHHHHHHHCCCEEE
VATGFGEWGMTNGTAAAILLKDLITNKENPWKDLYNPSRPMTSSSIKNLFTLNIDVAKEL
EEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHCEEEEEEHHHHHHH
VKGKLQGAPNTLDLNNDEGKVVTIDGRKYGAYKDNDGAIHLVDNTCTHLGCELKWNDAEK
HHHHHCCCCCEEECCCCCCEEEEECCCEECCEECCCCEEEEECCCCCCCCCEEEECCCCC
SWDCPCHGSRFSYEGDIIEGPAINKLNHYKEDPNRIDPNIL
CCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]