| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755671
Identifier: 170755671
GI number: 170755671
Start: 1448066
End: 1448530
Strand: Reverse
Name: 170755671
Synonym: CLD_3255
Alternate gene names: NA
Gene position: 1448530-1448066 (Counterclockwise)
Preceding gene: 170756736
Following gene: 170755761
Centisome position: 36.6
GC content: 26.67
Gene sequence:
>465_bases ATGTTTAAAGAAATAAGAAGGAAAGAAAAAAAGTTAAATAATGAGGAAAGTATTTCTTTATTAAAAGAATCTAATTATGG AATCCTTTCAGTATGTCTTAATAATGGGTATGCTTACGGTGTACCATTAAATTTTGTTTACAATAATGGGGCTATTTACT TTCATTGCGCAAGAGAAGGACAAAAACTTGAAGCAATAAATGAAAACAATAAAGTTTCATTTTCTATTGTAAATAATGTA GAATTACTTCCTTCAAAATTTGATACAAATTATGAAAGTGTAATAACCTTCGGTAAAGCTTATGAAGTATTTGAAGATGA AAAGAAACAAGCGTTACTAGCTCTTATAAATAAATACTCAAAAGATTATTTAAAAGAAGGTACAGCTTACATAGAAAGAG CTCAAGATAGAATTAGAATTATAAAGATTGAAATAGAACATATTACAGGTAAAGGCCAGAGATAA
Upstream 100 bases:
>100_bases TAATTTATCACCACTAACGCTGCTAGTATGTCTATATATATTTTTCAAATTAAATGTTAAAATATTAGGTAATATACTAT TATTTAAAGGGAGGCTTTAT
Downstream 100 bases:
>100_bases AAAATGAGGAAAGTGCGTCGCACTTTCCTTATTTTATTAATTTATATCTATAATATGATTTTGTCTATGATCACTCATAA AAAATACATTAAGAGATCCT
Product: 5-nitroimidazole antibiotic resistance protein
Products: NA
Alternate protein names: Nitroimidazole Resistance Protein; 5-Nitroimidazole Antibiotic Resistance Protein NimB; 5-Nitroimidazole Resistance Protein NimA; 5-Nitroimidazole Antibiotic Resistance Protein; 5-Nitroimidazole Antibiotics Resistance Protein; Nitroimidazole Resistance Protein NimA; Pyridoxamine 5-Phosphate Oxidase Family Protein; 5-Nitroimidazole Reductase; Nitroimidazole Resistance-Like Protein
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MFKEIRRKEKKLNNEESISLLKESNYGILSVCLNNGYAYGVPLNFVYNNGAIYFHCAREGQKLEAINENNKVSFSIVNNV ELLPSKFDTNYESVITFGKAYEVFEDEKKQALLALINKYSKDYLKEGTAYIERAQDRIRIIKIEIEHITGKGQR
Sequences:
>Translated_154_residues MFKEIRRKEKKLNNEESISLLKESNYGILSVCLNNGYAYGVPLNFVYNNGAIYFHCAREGQKLEAINENNKVSFSIVNNV ELLPSKFDTNYESVITFGKAYEVFEDEKKQALLALINKYSKDYLKEGTAYIERAQDRIRIIKIEIEHITGKGQR >Mature_154_residues MFKEIRRKEKKLNNEESISLLKESNYGILSVCLNNGYAYGVPLNFVYNNGAIYFHCAREGQKLEAINENNKVSFSIVNNV ELLPSKFDTNYESVITFGKAYEVFEDEKKQALLALINKYSKDYLKEGTAYIERAQDRIRIIKIEIEHITGKGQR
Specific function: Unknown
COG id: COG3467
COG function: function code R; Predicted flavin-nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17813; Mature: 17813
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKEIRRKEKKLNNEESISLLKESNYGILSVCLNNGYAYGVPLNFVYNNGAIYFHCAREG CCHHHHHHHHHCCCHHHHHEEECCCCCEEEEEECCCEEECCEEEEEEECCEEEEEECCCC QKLEAINENNKVSFSIVNNVELLPSKFDTNYESVITFGKAYEVFEDEKKQALLALINKYS CEEEECCCCCEEEEEEECCEEECCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHH KDYLKEGTAYIERAQDRIRIIKIEIEHITGKGQR HHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCC >Mature Secondary Structure MFKEIRRKEKKLNNEESISLLKESNYGILSVCLNNGYAYGVPLNFVYNNGAIYFHCAREG CCHHHHHHHHHCCCHHHHHEEECCCCCEEEEEECCCEEECCEEEEEEECCEEEEEECCCC QKLEAINENNKVSFSIVNNVELLPSKFDTNYESVITFGKAYEVFEDEKKQALLALINKYS CEEEECCCCCEEEEEEECCEEECCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHH KDYLKEGTAYIERAQDRIRIIKIEIEHITGKGQR HHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA