Click here to switch to the map view.

The map label for this gene is pchR [H]

Identifier: 170755498

GI number: 170755498

Start: 381624

End: 382661

Strand: Direct

Name: pchR [H]

Synonym: CLD_0450

Alternate gene names: 170755498

Gene position: 381624-382661 (Clockwise)

Preceding gene: 170754469

Following gene: 170756589

Centisome position: 9.64

GC content: 27.46

Gene sequence:

>1038_bases
ATGAAAAATAAATTTCATATAAATACAAAACAAGGATGTTCATCAATGATTATGCAATATTCATCAATACGTACCCAATT
CGCAACAATACGAGATTCTATGAATTTTAATAATGAAAAAGAAATTATATATGATATAAAACCCCAATATGGTAAAGGCT
ATATAAAATTTTATAAACTTATGGGAAATGTCATGCTTATAATTTATGATACAATATTTAATCATGATATGATAACAGAA
TTTGATCTATCGGAAGAATATTTTGAAATAGAATATTGTGTTGATGGTTGCTTAAATATCCATGAAGATAAAGTAGGAAA
TATGTGTCTTTCTAAGAATGAACTTTCTATATCAATGTCTCGTGAAACCTGTGGAAGAGTAGTTAATTGTGCAGGTCAGA
AATATCAAGGGATCTCAATTACTGCTGAAAAATCAGCTATAGCATCATATTTTGGTAGCTGTGGGATTGAGCTATGGGAG
GATACGATAGAGGAATTAGAAAATGAACTTAGAAATCAGTATTATCAAGGAATAAATGTTTCTCCTGAAATCACAAACAT
ATTTTTACAAATATTTAATTGCAGTTTACCAGAGAAATCGAAAATTTTATTTTTTGAAAGTAAGGTAATGGAAATGTTAT
CAAAGATAGTATCCTATGAAATTCTAGGGACAAATAAAACAAATCAATTTGAGCTGGATGAATTTGAAATTAATCAGATA
AAAAAGATACCAGAGGTATTAATGAAAAATTTATACGAACTTCCAACAGTAAATATTCTATCTAAGCAGCTAGCAATAAA
TAAGAATAAATTAGCAAAGGGATTTAAAGCAATATATGGTGATACTATATTTAGATACCATAGAAAAATGTGTCTACAGC
GTGCTGCTATATTATTAATAGATACTGATAAATCTATTAATGAAATTGCTCTTGATGTAGGATATTCAAATCCAAGTAAT
TTTTGTTATGCTTTTAAAAAGGAATTTGGAGTACCCCCTTTGCAATATAAAGATGACTCTTTAAAACTTGTAAATTAA

Upstream 100 bases:

>100_bases
ATAGTGCGTTGTAATATATTAAATGTGAATTATATAAACATTGAAATAAATCATAGGAAGTAGAAAAAGATTTATTGAGG
ACAAGAAAGGAGAGCATGGA

Downstream 100 bases:

>100_bases
TTTTTCCCATAATTTTTATTTATTTAAATTGCCACAGGTGTAGTACCTGTGGCTTATTTTATTGGAGAAATTTAGTTATC
TACTCATATATTTTACAACA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MKNKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFNNEKEIIYDIKPQYGKGYIKFYKLMGNVMLIIYDTIFNHDMITE
FDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNELSISMSRETCGRVVNCAGQKYQGISITAEKSAIASYFGSCGIELWE
DTIEELENELRNQYYQGINVSPEITNIFLQIFNCSLPEKSKILFFESKVMEMLSKIVSYEILGTNKTNQFELDEFEINQI
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKAIYGDTIFRYHRKMCLQRAAILLIDTDKSINEIALDVGYSNPSN
FCYAFKKEFGVPPLQYKDDSLKLVN

Sequences:

>Translated_345_residues
MKNKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFNNEKEIIYDIKPQYGKGYIKFYKLMGNVMLIIYDTIFNHDMITE
FDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNELSISMSRETCGRVVNCAGQKYQGISITAEKSAIASYFGSCGIELWE
DTIEELENELRNQYYQGINVSPEITNIFLQIFNCSLPEKSKILFFESKVMEMLSKIVSYEILGTNKTNQFELDEFEINQI
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKAIYGDTIFRYHRKMCLQRAAILLIDTDKSINEIALDVGYSNPSN
FCYAFKKEFGVPPLQYKDDSLKLVN
>Mature_345_residues
MKNKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFNNEKEIIYDIKPQYGKGYIKFYKLMGNVMLIIYDTIFNHDMITE
FDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNELSISMSRETCGRVVNCAGQKYQGISITAEKSAIASYFGSCGIELWE
DTIEELENELRNQYYQGINVSPEITNIFLQIFNCSLPEKSKILFFESKVMEMLSKIVSYEILGTNKTNQFELDEFEINQI
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKAIYGDTIFRYHRKMCLQRAAILLIDTDKSINEIALDVGYSNPSN
FCYAFKKEFGVPPLQYKDDSLKLVN

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39905; Mature: 39905

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFNNEKEIIYDIKPQYGKGYIKFYKL
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHH
MGNVMLIIYDTIFNHDMITEFDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNELSISMS
HCCEEEEEEHHHHCCCCEEEECCCCHHEEHHHHHHHHCCCCHHHHCCEEECCCCEEEEEC
RETCGRVVNCAGQKYQGISITAEKSAIASYFGSCGIELWEDTIEELENELRNQYYQGINV
HHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
SPEITNIFLQIFNCSLPEKSKILFFESKVMEMLSKIVSYEILGTNKTNQFELDEFEINQI
CHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCEEEECCCCCCCEECCHHHHHHH
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKAIYGDTIFRYHRKMCLQRAAILLI
HHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE
DTDKSINEIALDVGYSNPSNFCYAFKKEFGVPPLQYKDDSLKLVN
ECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MKNKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFNNEKEIIYDIKPQYGKGYIKFYKL
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHH
MGNVMLIIYDTIFNHDMITEFDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNELSISMS
HCCEEEEEEHHHHCCCCEEEECCCCHHEEHHHHHHHHCCCCHHHHCCEEECCCCEEEEEC
RETCGRVVNCAGQKYQGISITAEKSAIASYFGSCGIELWEDTIEELENELRNQYYQGINV
HHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
SPEITNIFLQIFNCSLPEKSKILFFESKVMEMLSKIVSYEILGTNKTNQFELDEFEINQI
CHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCEEEECCCCCCCEECCHHHHHHH
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKAIYGDTIFRYHRKMCLQRAAILLI
HHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE
DTDKSINEIALDVGYSNPSNFCYAFKKEFGVPPLQYKDDSLKLVN
ECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]