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The map label for this gene is rex

Identifier: 170754588

GI number: 170754588

Start: 3578282

End: 3578914

Strand: Reverse

Name: rex

Synonym: CLD_1217

Alternate gene names: 170754588

Gene position: 3578914-3578282 (Counterclockwise)

Preceding gene: 170756120

Following gene: 170754877

Centisome position: 90.42

GC content: 26.86

Gene sequence:

>633_bases
ATGGATAAGAAAAAAAATATTTCAATGGCAGTTATAAGAAGATTACCTAAATATCATAGATATTTGTATGAATTATTAAA
AAATGATGTAGACAGAATATCTTCAAAAGAATTAAGTGAAAAAATAGGATTTACTGCATCTCAAATACGCCAAGATTTGA
ACTGTTTTGGGGATTTTGGGCAACAAGGATATGGGTATAATGTTAGCGAATTACATCATCAGATAAGTAATATATTAGGG
CTAAATAATCCTTATAATATTATAATTATTGGAGCAGGTAACATAGGGCAAGCATTAGCAAATTACACTAGATTTTCAAA
ATTAGGATTTAATGTAAAAGCTATGTTTGATACAAATCCTAAATTAATAGGATTAAAAATAAGAGAAATAGAAATATTAG
ATATTGATTATTTATCTAGTTATCTAGAAAAAAACAATATAGATATAGGTATAATATGTGTACCCCATGATAATGCTCAA
AAGGTAGCCAATATTCTTGTTAAAAATGATATAAAGGGCATATGGAATTTTGCACCTATAGATTTGTCAGTTCCAGAGGA
TGTAGTAGTAGAAAATGTACATTTAAGTGATAGTCTTTTAACTTTGACTTGCTTAATAAATAAGACTGAGTAA

Upstream 100 bases:

>100_bases
ATATTACTATAGTATTCAGCAATTTTAGTGTATAATATTTAATTATATGATACAATATAGGTAATAATATTAGTAAAAAT
ATGATATTAAGAGGTGTAAT

Downstream 100 bases:

>100_bases
GAATATTAAATTTTATTTATTTTTAGATTTGGTTTGTTATTGTATTAACAAACCAAATGAAAATTGAAAACTTTTAAAGG
CTCTCTTCAATCCTGTTAAA

Product: redox-sensing transcriptional repressor Rex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MDKKKNISMAVIRRLPKYHRYLYELLKNDVDRISSKELSEKIGFTASQIRQDLNCFGDFGQQGYGYNVSELHHQISNILG
LNNPYNIIIIGAGNIGQALANYTRFSKLGFNVKAMFDTNPKLIGLKIREIEILDIDYLSSYLEKNNIDIGIICVPHDNAQ
KVANILVKNDIKGIWNFAPIDLSVPEDVVVENVHLSDSLLTLTCLINKTE

Sequences:

>Translated_210_residues
MDKKKNISMAVIRRLPKYHRYLYELLKNDVDRISSKELSEKIGFTASQIRQDLNCFGDFGQQGYGYNVSELHHQISNILG
LNNPYNIIIIGAGNIGQALANYTRFSKLGFNVKAMFDTNPKLIGLKIREIEILDIDYLSSYLEKNNIDIGIICVPHDNAQ
KVANILVKNDIKGIWNFAPIDLSVPEDVVVENVHLSDSLLTLTCLINKTE
>Mature_210_residues
MDKKKNISMAVIRRLPKYHRYLYELLKNDVDRISSKELSEKIGFTASQIRQDLNCFGDFGQQGYGYNVSELHHQISNILG
LNNPYNIIIIGAGNIGQALANYTRFSKLGFNVKAMFDTNPKLIGLKIREIEILDIDYLSSYLEKNNIDIGIICVPHDNAQ
KVANILVKNDIKGIWNFAPIDLSVPEDVVVENVHLSDSLLTLTCLINKTE

Specific function: Modulates transcription in response to changes in cellular NADH/NAD(+) redox state

COG id: COG2344

COG function: function code R; AT-rich DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory rex family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): REX_CLOB1 (A7FYQ1)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001385624.1
- ProteinModelPortal:   A7FYQ1
- SMR:   A7FYQ1
- STRING:   A7FYQ1
- GeneID:   5396364
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_3362
- eggNOG:   COG2344
- HOGENOM:   HBG482264
- OMA:   NFGGFGQ
- ProtClustDB:   PRK05472
- BioCyc:   CBOT441770:CLB_3362-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01131
- InterPro:   IPR003781
- InterPro:   IPR016040
- InterPro:   IPR009718
- InterPro:   IPR022876
- InterPro:   IPR011991
- Gene3D:   G3DSA:3.40.50.720
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00881

Pfam domain/function: PF02629 CoA_binding; PF06971 Put_DNA-bind_N

EC number: NA

Molecular weight: Translated: 23755; Mature: 23755

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKKNISMAVIRRLPKYHRYLYELLKNDVDRISSKELSEKIGFTASQIRQDLNCFGDFG
CCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
QQGYGYNVSELHHQISNILGLNNPYNIIIIGAGNIGQALANYTRFSKLGFNVKAMFDTNP
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC
KLIGLKIREIEILDIDYLSSYLEKNNIDIGIICVPHDNAQKVANILVKNDIKGIWNFAPI
CEEEEEEEEEEEEEHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCHHCCCCCC
DLSVPEDVVVENVHLSDSLLTLTCLINKTE
CCCCCHHHHEEEEECCCHHEEEEEEEECCC
>Mature Secondary Structure
MDKKKNISMAVIRRLPKYHRYLYELLKNDVDRISSKELSEKIGFTASQIRQDLNCFGDFG
CCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
QQGYGYNVSELHHQISNILGLNNPYNIIIIGAGNIGQALANYTRFSKLGFNVKAMFDTNP
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC
KLIGLKIREIEILDIDYLSSYLEKNNIDIGIICVPHDNAQKVANILVKNDIKGIWNFAPI
CEEEEEEEEEEEEEHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCHHCCCCCC
DLSVPEDVVVENVHLSDSLLTLTCLINKTE
CCCCCHHHHEEEEECCCHHEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA