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The map label for this gene is csgD [C]

Identifier: 170752017

GI number: 170752017

Start: 5980546

End: 5982006

Strand: Direct

Name: csgD [C]

Synonym: Mrad2831_5649

Alternate gene names: 170752017

Gene position: 5980546-5982006 (Clockwise)

Preceding gene: 170752015

Following gene: 170752018

Centisome position: 98.4

GC content: 70.91

Gene sequence:

>1461_bases
GTGACGGCGGGGGTCGACAGGCATGAGCTCCGGCAGATCATCGCCGGGTTGAGCGAGGGCGTGATCCTGGTCGAGCCCGA
CCAGACCATCGCCTACGCCAACGCCGCCGCCCTGGCGATGCACGGCGCCCAGAGCCTCGACGAGCTCGGCCCCACCGTCG
ACGCCTACCGCGACCGCTTCTGCCTGCGCTACCGCAACCACATCGTGCCCAACCAGTACCCGATCGAGCGCGTCGTGGCC
GGCGAGCGCTTCCACGACGTCGTGGTCGAGGTGCGGCGGGCCGACAGACCCGACGTGGACTTCGTCCACTCCCTGCGCAG
CCTCGTGGCCACCGACCGCGACGGCAACCCGAGCTGCCTCGCCCTGATCCTCAAGGACGTCTCCGACCAGTTCGAGGCCG
AGGAGCGGTTCGAGCGCACCTTCAACGCCAACCCGGCCCCGGCCGTGATCACGCGGCTGTCCGACCTGCGCCACGTCAAG
GTCAACCACGGCTTCCTGGAGATGACCGGCCACACCCGCGACGCCGTCATCGGCCGCAGCGTCTACGAGGTCGACGTCCT
GGCCGGCGCCCGCAACCGCGACCTCGCCGTCGCGCGCCTCAACGCCGGCGGCACGATCCCGCAGATGGAGGCCTGCCTCG
ACCTGCCCGACGGCGGCAGCCGCTTCGTGATCGTCGCCGGGCAGCCGATCGCGATGGGCGACGAGCCCTGCATGCTGTTC
ACCTTCGCCGACCTCGAGCTGCGCCGCAAAGCCGAGGCCGCGCTGCGCCAGAGCGAGGAGCGCTTCGCCACGGCGTTCCG
GATGACGCCGGTGCCGACCGTGCTGGTGCGCGCCGACGACGGCCAGGTCACGGGTGTGAACGAGGCGTTCAGCCGGGTCT
TCGGCCTGGGCGAGGACCGCGTCGTCGGCCGCTCGCTGGCGGAGGCCGGGCTGTGGGTCGCCGACAAGCAGCGCCTGCAG
GTCGAGGCCGCGCTGGAGCGCCAGGGCTACGTGCTGGGCGTCGAGGTCTGCCTGCGCCACGAGAGCGGCGCGAACCTCGA
CTGCCTGGTCTCGGCCGAGCGGATCACGATCAACGAGACCGCCTTCGTGCTGCTGGTGCTGCAGGACATCACCGAGCGCA
AGCACACCGAGCGGGAGCTGTTCGACGCGATCGAGACGGTGATGGCCGACACGTCGTGGTTCAGCCGCGGGCTGATCGAG
AAGCTGGCCAACCTGCGCCGGCCGGGCCGGGAGGCGGGCGACGCGGCGGCGCCGAACCTGACGGTGCGCGAGCGCCAGAT
CCTCAACCTGATCTGCTCGGGGCTCAGCGACGACGCGATCGCGCGCAAGCTCGGCCTGTCGCGCAACACGGTGCGCAATC
ACGGCGCCGCGCTCTACCGCAAGATCGGCATCCACAAGCGCAGCGAGGCGGTCGTCTGGGGGCGCGAGAACGGTTTTCCC
CTGAACATCTCTGACGGATAG

Upstream 100 bases:

>100_bases
ACCAGTGAAAATTGCGGATCTGGTGGAACCGGCTTGTGCGCAACCCGTTTGTGCCCCGCTGCCGCGAGGGCAGTGACGGC
AGGCGGGGGGCGCGGGAGCT

Downstream 100 bases:

>100_bases
ATACCGCCATACTGGTACAACCACACCATTGATCGGCCACGCCCGGCGCACATCTTCCGGTCGGCCAGGGTTTTCTCACG
CAGGACGGGGCGCCCATGAC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Multi-Sensor Signal Transduction Histidine Kinase; PAS/PAC Sensor Signal Transduction Histidine Kinase; PAS Fold Family; Two-Component Hybrid Sensor And Regulator; Multi-Sensor Hybrid Histidine Kinase; Transcriptional Regulator LuxR Family; PAS/PAC Sensor Hybrid Histidine Kinase; Sensory Box Protein; PAS Sensor Protein; Sensory Box Histidine Kinase; PasGgdef; Sensory Box/GGDEF Domain/EAL Domain Protein; Sensory Transduction Histidine Kinase; Signal Transduction Histidine Kinase; PAS/PAC Sensor Protein; Sensory Box Histidine Kinase/Response Regulator Protein; Transcriptional Regulator LuxR Family Protein; Pas/Pac Sensor Signal Transduction Histidine Kinase; Histidine Kinase; Sensor Protein FixL; Diguanylate Cyclase/Phosphodiesterase; Chemotaxis Methyltransferase Protein; Signaling GGDEF/EAL Domain-Containing Protein; Diguanylate Cyclase With PAS/PAC Sensor; Diguanylate Cyclase; Sensor Protein; Sensory Box-Containing Diguanylate Cyclase; Sensory Box Transcriptional Regulator; Sensor Protein PAS/PAS Domain-Containing Protein; Sigma-54 Dependent Trancsriptional Regulator; Sensory Box; Signal Transduction Histidine Kinase-Like Protein; LuxR Family Regulatory Protein; Sensory Box GGDEF/EAL Domain-Containing Protein; Histidine Kinase Sensor Protein; Signaling Protein; FOG PAS/PAC Domain Protein; Sensory Box/GGDEF Family Protein; Hybrid Histidine Kinase; Sensory/Regulatory Protein RpfC

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MTAGVDRHELRQIIAGLSEGVILVEPDQTIAYANAAALAMHGAQSLDELGPTVDAYRDRFCLRYRNHIVPNQYPIERVVA
GERFHDVVVEVRRADRPDVDFVHSLRSLVATDRDGNPSCLALILKDVSDQFEAEERFERTFNANPAPAVITRLSDLRHVK
VNHGFLEMTGHTRDAVIGRSVYEVDVLAGARNRDLAVARLNAGGTIPQMEACLDLPDGGSRFVIVAGQPIAMGDEPCMLF
TFADLELRRKAEAALRQSEERFATAFRMTPVPTVLVRADDGQVTGVNEAFSRVFGLGEDRVVGRSLAEAGLWVADKQRLQ
VEAALERQGYVLGVEVCLRHESGANLDCLVSAERITINETAFVLLVLQDITERKHTERELFDAIETVMADTSWFSRGLIE
KLANLRRPGREAGDAAAPNLTVRERQILNLICSGLSDDAIARKLGLSRNTVRNHGAALYRKIGIHKRSEAVVWGRENGFP
LNISDG

Sequences:

>Translated_486_residues
MTAGVDRHELRQIIAGLSEGVILVEPDQTIAYANAAALAMHGAQSLDELGPTVDAYRDRFCLRYRNHIVPNQYPIERVVA
GERFHDVVVEVRRADRPDVDFVHSLRSLVATDRDGNPSCLALILKDVSDQFEAEERFERTFNANPAPAVITRLSDLRHVK
VNHGFLEMTGHTRDAVIGRSVYEVDVLAGARNRDLAVARLNAGGTIPQMEACLDLPDGGSRFVIVAGQPIAMGDEPCMLF
TFADLELRRKAEAALRQSEERFATAFRMTPVPTVLVRADDGQVTGVNEAFSRVFGLGEDRVVGRSLAEAGLWVADKQRLQ
VEAALERQGYVLGVEVCLRHESGANLDCLVSAERITINETAFVLLVLQDITERKHTERELFDAIETVMADTSWFSRGLIE
KLANLRRPGREAGDAAAPNLTVRERQILNLICSGLSDDAIARKLGLSRNTVRNHGAALYRKIGIHKRSEAVVWGRENGFP
LNISDG
>Mature_485_residues
TAGVDRHELRQIIAGLSEGVILVEPDQTIAYANAAALAMHGAQSLDELGPTVDAYRDRFCLRYRNHIVPNQYPIERVVAG
ERFHDVVVEVRRADRPDVDFVHSLRSLVATDRDGNPSCLALILKDVSDQFEAEERFERTFNANPAPAVITRLSDLRHVKV
NHGFLEMTGHTRDAVIGRSVYEVDVLAGARNRDLAVARLNAGGTIPQMEACLDLPDGGSRFVIVAGQPIAMGDEPCMLFT
FADLELRRKAEAALRQSEERFATAFRMTPVPTVLVRADDGQVTGVNEAFSRVFGLGEDRVVGRSLAEAGLWVADKQRLQV
EAALERQGYVLGVEVCLRHESGANLDCLVSAERITINETAFVLLVLQDITERKHTERELFDAIETVMADTSWFSRGLIEK
LANLRRPGREAGDAAAPNLTVRERQILNLICSGLSDDAIARKLGLSRNTVRNHGAALYRKIGIHKRSEAVVWGRENGFPL
NISDG

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53661; Mature: 53529

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS50112 PAS ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGVDRHELRQIIAGLSEGVILVEPDQTIAYANAAALAMHGAQSLDELGPTVDAYRDRF
CCCCCCHHHHHHHHHCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
CLRYRNHIVPNQYPIERVVAGERFHDVVVEVRRADRPDVDFVHSLRSLVATDRDGNPSCL
HHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHH
ALILKDVSDQFEAEERFERTFNANPAPAVITRLSDLRHVKVNHGFLEMTGHTRDAVIGRS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEECCCEEEECCCCHHHHHCCC
VYEVDVLAGARNRDLAVARLNAGGTIPQMEACLDLPDGGSRFVIVAGQPIAMGDEPCMLF
EEEEEEECCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCEEEEECCCCEEECCCCEEEE
TFADLELRRKAEAALRQSEERFATAFRMTPVPTVLVRADDGQVTGVNEAFSRVFGLGEDR
EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECHHHHHHHHHCCCCCH
VVGRSLAEAGLWVADKQRLQVEAALERQGYVLGVEVCLRHESGANLDCLVSAERITINET
HHHHHHHHCCCEEECHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEEECEEEECCH
AFVLLVLQDITERKHTERELFDAIETVMADTSWFSRGLIEKLANLRRPGREAGDAAAPNL
HEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
TVRERQILNLICSGLSDDAIARKLGLSRNTVRNHGAALYRKIGIHKRSEAVVWGRENGFP
CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEE
LNISDG
EECCCC
>Mature Secondary Structure 
TAGVDRHELRQIIAGLSEGVILVEPDQTIAYANAAALAMHGAQSLDELGPTVDAYRDRF
CCCCCHHHHHHHHHCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
CLRYRNHIVPNQYPIERVVAGERFHDVVVEVRRADRPDVDFVHSLRSLVATDRDGNPSCL
HHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHH
ALILKDVSDQFEAEERFERTFNANPAPAVITRLSDLRHVKVNHGFLEMTGHTRDAVIGRS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEECCCEEEECCCCHHHHHCCC
VYEVDVLAGARNRDLAVARLNAGGTIPQMEACLDLPDGGSRFVIVAGQPIAMGDEPCMLF
EEEEEEECCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCEEEEECCCCEEECCCCEEEE
TFADLELRRKAEAALRQSEERFATAFRMTPVPTVLVRADDGQVTGVNEAFSRVFGLGEDR
EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECHHHHHHHHHCCCCCH
VVGRSLAEAGLWVADKQRLQVEAALERQGYVLGVEVCLRHESGANLDCLVSAERITINET
HHHHHHHHCCCEEECHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEEECEEEECCH
AFVLLVLQDITERKHTERELFDAIETVMADTSWFSRGLIEKLANLRRPGREAGDAAAPNL
HEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
TVRERQILNLICSGLSDDAIARKLGLSRNTVRNHGAALYRKIGIHKRSEAVVWGRENGFP
CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEE
LNISDG
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA