| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is oppD [H]
Identifier: 170751461
GI number: 170751461
Start: 5397039
End: 5398055
Strand: Reverse
Name: oppD [H]
Synonym: Mrad2831_5080
Alternate gene names: 170751461
Gene position: 5398055-5397039 (Counterclockwise)
Preceding gene: 170751462
Following gene: 170751460
Centisome position: 88.82
GC content: 72.57
Gene sequence:
>1017_bases ATGACCAAGCCCCTCCTCGACGTCCGCGACCTCGCGGTCGCCTTCGACACCGACGGCGGCGCGGTCCACGCGGTCAACGG CGTGTCCTACACCCTGCACGAGGGGGAGACGCTGGGGATCGTCGGCGAGTCGGGCTCCGGCAAGAGCGTGCACGTGCTCG CCATGTTGGGCCTGATCCCGCGCCCGCCCGGCCGCATCACCGGCGGGCAGGTGCTGTTCGAGGGCCGCGACCTCCTCGCC CTGAAGGAGCGGGAACTCCGAAAGATCCGCGGCGGCGCGATCGGCTTCGTCTTCCAGGACCCGATGAGCTCGCTCAACCC CGGCATGACCGTGGCGGCGCAGATCGTCGAGCCCCTGCGCATCCATCTGGGCCTCGACGCCCGCGCGGCCCGCGCCCGGG CGAAGGACCTGCTCGATCTCGTGCGCATCCCGAACGCGGCCGCCCGCCTCGACCAGTACCCGCACGAGTTCTCCGGCGGC CAGCGCCAGCGGGTCATGATCGCCATCGGTCTCAGCTGCCGCCCGAAGCTGCTCATCGCCGACGAGGCGACCACCGCCCT CGACGTCACCGTCCAGGCCGAGATCGTCGCCCTGGTGCAGGAGCTGAAGCGCGAGCTCGGCATGGCGATCATCTGGATCA CCCACGATCTCGGCGTGGTGGCCGGCATCAGCGACACCGTGCAGGTGATGTATGCCGGCCGGATCCTGGAACGCGGCCCG GTCGACGACATCTTCTCGGATCCGCGCAACGCCTACACGCTGGGGCTGCTGCGCTCCCTGCCGGACCTGTCCAGCGGCCG GGCCGGGCGGCGGCGCCTGCACCAGATCGAGGGCGCGCCGCCGGACATGCGCCACCCGCCGCCGGGCGATCCCTTCGCGC CGCGCAACGCCTACGCCACACCCCGCTGCCGGGCCGAGATGCCGCCCCTGGCGCAGGCGCCCGGTGCCGCTCCGGGCCAC CTCGTCGCCGCCTGGTACGACCTGCCGAAGCTCCTGAGCCGGGAGGCCGCACGATGA
Upstream 100 bases:
>100_bases GGATGGCGATCTGGCCGGGCCTGTCGATCTTCCTGGCGGTGCTCGCCTTCAACCTGTTCGGCGACGGATTGCGGGACGCC CTCGACCCGAGGCAGCGCAC
Downstream 100 bases:
>100_bases GCGGGCAGGATTACCCGGTCGTCTCGGTGCGCGACCTGTCCAAGCACTATCCCCTCCGCTCGTGGTGGGGCGGCAAGGCC TCGGTGTTCCGCGCCGTAGA
Product: oligopeptide/dipeptide ABC transporter ATPase
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MTKPLLDVRDLAVAFDTDGGAVHAVNGVSYTLHEGETLGIVGESGSGKSVHVLAMLGLIPRPPGRITGGQVLFEGRDLLA LKERELRKIRGGAIGFVFQDPMSSLNPGMTVAAQIVEPLRIHLGLDARAARARAKDLLDLVRIPNAAARLDQYPHEFSGG QRQRVMIAIGLSCRPKLLIADEATTALDVTVQAEIVALVQELKRELGMAIIWITHDLGVVAGISDTVQVMYAGRILERGP VDDIFSDPRNAYTLGLLRSLPDLSSGRAGRRRLHQIEGAPPDMRHPPPGDPFAPRNAYATPRCRAEMPPLAQAPGAAPGH LVAAWYDLPKLLSREAAR
Sequences:
>Translated_338_residues MTKPLLDVRDLAVAFDTDGGAVHAVNGVSYTLHEGETLGIVGESGSGKSVHVLAMLGLIPRPPGRITGGQVLFEGRDLLA LKERELRKIRGGAIGFVFQDPMSSLNPGMTVAAQIVEPLRIHLGLDARAARARAKDLLDLVRIPNAAARLDQYPHEFSGG QRQRVMIAIGLSCRPKLLIADEATTALDVTVQAEIVALVQELKRELGMAIIWITHDLGVVAGISDTVQVMYAGRILERGP VDDIFSDPRNAYTLGLLRSLPDLSSGRAGRRRLHQIEGAPPDMRHPPPGDPFAPRNAYATPRCRAEMPPLAQAPGAAPGH LVAAWYDLPKLLSREAAR >Mature_337_residues TKPLLDVRDLAVAFDTDGGAVHAVNGVSYTLHEGETLGIVGESGSGKSVHVLAMLGLIPRPPGRITGGQVLFEGRDLLAL KERELRKIRGGAIGFVFQDPMSSLNPGMTVAAQIVEPLRIHLGLDARAARARAKDLLDLVRIPNAAARLDQYPHEFSGGQ RQRVMIAIGLSCRPKLLIADEATTALDVTVQAEIVALVQELKRELGMAIIWITHDLGVVAGISDTVQVMYAGRILERGPV DDIFSDPRNAYTLGLLRSLPDLSSGRAGRRRLHQIEGAPPDMRHPPPGDPFAPRNAYATPRCRAEMPPLAQAPGAAPGHL VAAWYDLPKLLSREAAR
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=228, Percent_Identity=30.7017543859649, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI171184400, Length=237, Percent_Identity=31.6455696202532, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI156105685, Length=232, Percent_Identity=30.6034482758621, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4505771, Length=220, Percent_Identity=30.4545454545455, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI9961250, Length=220, Percent_Identity=30.4545454545455, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI9961252, Length=220, Percent_Identity=30.4545454545455, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI255708477, Length=243, Percent_Identity=29.2181069958848, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI21536378, Length=239, Percent_Identity=28.0334728033473, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI9665248, Length=243, Percent_Identity=28.8065843621399, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI148612844, Length=233, Percent_Identity=30.0429184549356, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI48994883, Length=328, Percent_Identity=50.9146341463415, Blast_Score=301, Evalue=5e-83, Organism=Escherichia coli, GI1789963, Length=306, Percent_Identity=48.6928104575163, Blast_Score=285, Evalue=4e-78, Organism=Escherichia coli, GI1787759, Length=333, Percent_Identity=41.1411411411411, Blast_Score=258, Evalue=5e-70, Organism=Escherichia coli, GI145693107, Length=290, Percent_Identity=46.2068965517241, Blast_Score=248, Evalue=4e-67, Organism=Escherichia coli, GI1788506, Length=262, Percent_Identity=46.9465648854962, Blast_Score=232, Evalue=3e-62, Organism=Escherichia coli, GI1787500, Length=319, Percent_Identity=41.3793103448276, Blast_Score=226, Evalue=2e-60, Organism=Escherichia coli, GI1789962, Length=334, Percent_Identity=39.5209580838323, Blast_Score=209, Evalue=2e-55, Organism=Escherichia coli, GI1787548, Length=305, Percent_Identity=37.0491803278689, Blast_Score=198, Evalue=4e-52, Organism=Escherichia coli, GI1787758, Length=313, Percent_Identity=35.7827476038339, Blast_Score=164, Evalue=7e-42, Organism=Escherichia coli, GI1787547, Length=263, Percent_Identity=34.6007604562738, Blast_Score=144, Evalue=6e-36, Organism=Escherichia coli, GI48994997, Length=262, Percent_Identity=37.0229007633588, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1789890, Length=235, Percent_Identity=37.8723404255319, Blast_Score=141, Evalue=6e-35, Organism=Escherichia coli, GI1786398, Length=255, Percent_Identity=34.1176470588235, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1789891, Length=227, Percent_Identity=37.8854625550661, Blast_Score=131, Evalue=5e-32, Organism=Escherichia coli, GI1789032, Length=275, Percent_Identity=34.1818181818182, Blast_Score=121, Evalue=6e-29, Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=32.8125, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI87081791, Length=283, Percent_Identity=31.095406360424, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87081834, Length=235, Percent_Identity=34.0425531914894, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1787089, Length=234, Percent_Identity=34.6153846153846, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788761, Length=241, Percent_Identity=30.2904564315353, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787712, Length=251, Percent_Identity=31.0756972111554, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1790162, Length=267, Percent_Identity=27.7153558052434, Blast_Score=101, Evalue=9e-23, Organism=Escherichia coli, GI1787370, Length=227, Percent_Identity=29.5154185022026, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI87081709, Length=255, Percent_Identity=26.2745098039216, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787029, Length=245, Percent_Identity=31.4285714285714, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1787105, Length=228, Percent_Identity=32.4561403508772, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI1789672, Length=244, Percent_Identity=30.327868852459, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=35.0253807106599, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1786872, Length=210, Percent_Identity=32.8571428571429, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788644, Length=257, Percent_Identity=32.6848249027237, Blast_Score=89, Evalue=6e-19, Organism=Escherichia coli, GI1789873, Length=202, Percent_Identity=33.1683168316832, Blast_Score=89, Evalue=6e-19, Organism=Escherichia coli, GI1788450, Length=236, Percent_Identity=29.2372881355932, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1790190, Length=215, Percent_Identity=30.6976744186047, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786698, Length=215, Percent_Identity=28.8372093023256, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1790467, Length=240, Percent_Identity=27.9166666666667, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786563, Length=227, Percent_Identity=29.9559471365639, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1786345, Length=223, Percent_Identity=29.1479820627803, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1790534, Length=234, Percent_Identity=29.9145299145299, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789991, Length=232, Percent_Identity=28.8793103448276, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1790525, Length=350, Percent_Identity=25.1428571428571, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87082267, Length=256, Percent_Identity=25.78125, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=28.2511210762332, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1790739, Length=259, Percent_Identity=28.1853281853282, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1789593, Length=223, Percent_Identity=26.0089686098655, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1789586, Length=246, Percent_Identity=27.2357723577236, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1787792, Length=216, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787972, Length=247, Percent_Identity=29.1497975708502, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48995001, Length=220, Percent_Identity=29.0909090909091, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1786319, Length=221, Percent_Identity=28.5067873303167, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786253, Length=226, Percent_Identity=28.7610619469027, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786803, Length=214, Percent_Identity=26.1682242990654, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1787143, Length=251, Percent_Identity=31.4741035856574, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1788472, Length=225, Percent_Identity=28, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI1786981, Length=219, Percent_Identity=26.4840182648402, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788053, Length=194, Percent_Identity=30.4123711340206, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193209708, Length=314, Percent_Identity=29.6178343949045, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI193202349, Length=235, Percent_Identity=30.2127659574468, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17541710, Length=245, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17567265, Length=229, Percent_Identity=29.2576419213974, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI212646699, Length=223, Percent_Identity=28.2511210762332, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17558664, Length=237, Percent_Identity=28.6919831223629, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI25146777, Length=243, Percent_Identity=29.2181069958848, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71984940, Length=254, Percent_Identity=26.3779527559055, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17569143, Length=239, Percent_Identity=29.2887029288703, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI115534520, Length=230, Percent_Identity=29.5652173913043, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193208177, Length=250, Percent_Identity=27.6, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17569145, Length=234, Percent_Identity=29.4871794871795, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71992290, Length=227, Percent_Identity=29.9559471365639, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=256, Percent_Identity=26.171875, Blast_Score=80, Evalue=6e-16, Organism=Saccharomyces cerevisiae, GI6323217, Length=235, Percent_Identity=28.0851063829787, Blast_Score=63, Evalue=8e-11, Organism=Drosophila melanogaster, GI17136662, Length=223, Percent_Identity=28.2511210762332, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24641565, Length=221, Percent_Identity=30.316742081448, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI85726357, Length=223, Percent_Identity=30.4932735426009, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI23397593, Length=236, Percent_Identity=31.3559322033898, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36376; Mature: 36244
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKPLLDVRDLAVAFDTDGGAVHAVNGVSYTLHEGETLGIVGESGSGKSVHVLAMLGLIP CCCCCCCHHHEEEEEECCCCEEEEECCEEEEEECCCEEEEEECCCCCCCEEEEEEHHCCC RPPGRITGGQVLFEGRDLLALKERELRKIRGGAIGFVFQDPMSSLNPGMTVAAQIVEPLR CCCCCCCCCEEEECCCCEEHHHHHHHHHHCCCEEEEEECCCHHHCCCCHHHHHHHHHHHH IHLGLDARAARARAKDLLDLVRIPNAAARLDQYPHEFSGGQRQRVMIAIGLSCRPKLLIA EEECCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHCCCCCEEEEEEECCCCCCEEEEE DEATTALDVTVQAEIVALVQELKRELGMAIIWITHDLGVVAGISDTVQVMYAGRILERGP CCCCEEEEEEHHHHHHHHHHHHHHHHCEEEEEEEECCCEEECCHHHHHHHHHHHHHCCCC VDDIFSDPRNAYTLGLLRSLPDLSSGRAGRRRLHQIEGAPPDMRHPPPGDPFAPRNAYAT CHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PRCRAEMPPLAQAPGAAPGHLVAAWYDLPKLLSREAAR CCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCC >Mature Secondary Structure TKPLLDVRDLAVAFDTDGGAVHAVNGVSYTLHEGETLGIVGESGSGKSVHVLAMLGLIP CCCCCCHHHEEEEEECCCCEEEEECCEEEEEECCCEEEEEECCCCCCCEEEEEEHHCCC RPPGRITGGQVLFEGRDLLALKERELRKIRGGAIGFVFQDPMSSLNPGMTVAAQIVEPLR CCCCCCCCCEEEECCCCEEHHHHHHHHHHCCCEEEEEECCCHHHCCCCHHHHHHHHHHHH IHLGLDARAARARAKDLLDLVRIPNAAARLDQYPHEFSGGQRQRVMIAIGLSCRPKLLIA EEECCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHCCCCCEEEEEEECCCCCCEEEEE DEATTALDVTVQAEIVALVQELKRELGMAIIWITHDLGVVAGISDTVQVMYAGRILERGP CCCCEEEEEEHHHHHHHHHHHHHHHHCEEEEEEEECCCEEECCHHHHHHHHHHHHHCCCC VDDIFSDPRNAYTLGLLRSLPDLSSGRAGRRRLHQIEGAPPDMRHPPPGDPFAPRNAYAT CHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PRCRAEMPPLAQAPGAAPGHLVAAWYDLPKLLSREAAR CCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]