| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is fliF [H]
Identifier: 170751440
GI number: 170751440
Start: 5373307
End: 5374884
Strand: Reverse
Name: fliF [H]
Synonym: Mrad2831_5059
Alternate gene names: 170751440
Gene position: 5374884-5373307 (Counterclockwise)
Preceding gene: 170751441
Following gene: 170751439
Centisome position: 88.43
GC content: 71.29
Gene sequence:
>1578_bases ATGGCGGCGGTGACGCTGACGCTCATCGGCTTCTTCGCCTTCATCATCCTGCGGGTCTCGCGCCCCGATATGGGCGTGCT GTTCTCCGACCTGTCGATGCAGGACTCCGCGTCCGTGGTCCGGGAATTGGACAGCCGCGGGATCCGCTACGAGACGCGGG GCGATGCCGGGCAGACGATCCTGGCCCCGCGCCCGGACCTCGCCAAGCTGCGCATGGACCTCGCCGGCAAGGGGCTGCCG ACCCAGGGCGGCGTCGGCTACGAGATCTTCGACAAGGGCGACGCGTTCTCATCCACCAACTTCGTTCAGAACGTGAATCA CCTGCGCGCCCTGGAGGGCGAGCTGGCGCGCTCGATCCGGGCGATCGGCCGGGTCCAGGCGGCCCGTGTCCACCTCGTCC TGCCGGAGCGCCGCCTGTTCGAGCGGGACCGGGAAAGCCCGAGCGCGGCGATCGTGCTGAAGCTGATGGGCGACCTCGAT GCCGGGCAGGTCCGGGCGATCCGCCATCTCGTGGCCTCCGCCGTGGAGGGCCTCAAGCCCGAGCGGATCTCGATCGTCGA CGAGCGCGGCCGGCTCCTGGCGGACGGCGCGCGGGATGCCGCGACCGACGTCGCCAGCGGGTTCGAGGACCGGCAGGTCG CCCTCGAGCGGCGCCTGCGCGGCCAGATCGAGGACGTCGTCGCCGGCATCGTCGGCCCGGGCCGGGCCCGCGTCCAGGTC AACGCGGAACTCGACCTCAACCGGGTCGAGAGCCGCTCCGAGACGTTCGATCCCGAGAGCCGCGTCGTGCGCTCCGCCCA GACCCGCACCGAATCGGCGGTCACCGGCAATGCCGAGGGGCAGGTCAGCGTCGGCAACGAGCTGCCCGGCGCCAATGGCG GCGACAAGGCGCCGACGCCCAAGGACGCGACCAACAAGAACGAGGAAACCACGAATTACGAGATCTCCCGGGTCACCAAG ACCGAGATCGCCGAGGGCGGCCGGATCAAGCGCCTGTCGGTCGCGGTGGTGCTCGACGGGGTCTACGCCGCCGCGCCCGA CGGCAAGCAGACCTATAGCCCGCGCACGCCCGCCGAGATCGAGCGGATCACCGCGCTGGTCCGCGGCGCGGTCGGTTTCG ACAAGGCCCGCGGCGACCAGATCGAGGTGGTGAACCTGCGCTTCGCGGAAGCGCCGAGCGTGCCGCAATTCACCGAGCCG ACGCTGATCGAGTCGCTGCTCGCCCCCACCAAGGACGACGTGCTGCGCATGGCCGAGCTCGCCGTCCTGGCGCTGCTGAC CCTGATCGTCCTCCTCACGGTGGTCCGCCCCCTGGTGCGCCAGGTGCTCGCGCCGGTGCCGGAAGCGCCGGCCCTGACCG CGTCGGGACTGGCGATCCCCGGCGACGCCGCCGTGGTCGCGGGTCCGGGCGGGACCGTGACGGTCATCGACCGCGACAGC CCGACCGCGCGGCTGATGGAGTTCGCCAAGATCAACGGCCAGGTCCAGGCCGAGACGGTCCAGCGCGTGGTCGACATGGT CCGGGCGAGCCCGTCCGAGACCGTCGAGGTGCTGCGCACCTGGATCCAGGAAGAGTGA
Upstream 100 bases:
>100_bases GCGGACCGCCGGGGTCCGCCAGCGTTAGAGTGCAGCGAATCCTCCCGTGAAGCCGGTTCTCGATCTCGTCACGAAGTTCG GACCGGCCCGAATCGCCGCC
Downstream 100 bases:
>100_bases AGCGTAGGGCGTCGAGGGCAACACGATGGCGGCAGGTGCGGGACAGGGTCTGGCGAACACGCTGGCGACGGCGGGCGGCG ATTCATTCGCGTCGATGCCC
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 525; Mature: 524
Protein sequence:
>525_residues MAAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTILAPRPDLAKLRMDLAGKGLP TQGGVGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSIRAIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLD AGQVRAIRHLVASAVEGLKPERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQV NAELDLNRVESRSETFDPESRVVRSAQTRTESAVTGNAEGQVSVGNELPGANGGDKAPTPKDATNKNEETTNYEISRVTK TEIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPRTPAEIERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEP TLIESLLAPTKDDVLRMAELAVLALLTLIVLLTVVRPLVRQVLAPVPEAPALTASGLAIPGDAAVVAGPGGTVTVIDRDS PTARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQEE
Sequences:
>Translated_525_residues MAAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTILAPRPDLAKLRMDLAGKGLP TQGGVGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSIRAIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLD AGQVRAIRHLVASAVEGLKPERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQV NAELDLNRVESRSETFDPESRVVRSAQTRTESAVTGNAEGQVSVGNELPGANGGDKAPTPKDATNKNEETTNYEISRVTK TEIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPRTPAEIERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEP TLIESLLAPTKDDVLRMAELAVLALLTLIVLLTVVRPLVRQVLAPVPEAPALTASGLAIPGDAAVVAGPGGTVTVIDRDS PTARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQEE >Mature_524_residues AAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTILAPRPDLAKLRMDLAGKGLPT QGGVGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSIRAIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLDA GQVRAIRHLVASAVEGLKPERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQVN AELDLNRVESRSETFDPESRVVRSAQTRTESAVTGNAEGQVSVGNELPGANGGDKAPTPKDATNKNEETTNYEISRVTKT EIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPRTPAEIERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEPT LIESLLAPTKDDVLRMAELAVLALLTLIVLLTVVRPLVRQVLAPVPEAPALTASGLAIPGDAAVVAGPGGTVTVIDRDSP TARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQEE
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=434, Percent_Identity=35.0230414746544, Blast_Score=212, Evalue=5e-56,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 56447; Mature: 56316
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTI CCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCEE LAPRPDLAKLRMDLAGKGLPTQGGVGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSIR ECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLDAGQVRAIRHLVASAVEGLKP HHHHHHHEEEEEECCHHHHHHHCCCCCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCC ERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQV CCEEEECCCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE NAELDLNRVESRSETFDPESRVVRSAQTRTESAVTGNAEGQVSVGNELPGANGGDKAPTP ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC KDATNKNEETTNYEISRVTKTEIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPRTPAEI CCCCCCCCCCCCEEEEHHHHHHHCCCCCEEEEEEEEEECCHHCCCCCCCCCCCCCCHHHH ERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEPTLIESLLAPTKDDVLRMAEL HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH AVLALLTLIVLLTVVRPLVRQVLAPVPEAPALTASGLAIPGDAAVVAGPGGTVTVIDRDS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEEECCCCEEEEEECCC PTARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQEE CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC >Mature Secondary Structure AAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTI CHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCEE LAPRPDLAKLRMDLAGKGLPTQGGVGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSIR ECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLDAGQVRAIRHLVASAVEGLKP HHHHHHHEEEEEECCHHHHHHHCCCCCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCC ERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQV CCEEEECCCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE NAELDLNRVESRSETFDPESRVVRSAQTRTESAVTGNAEGQVSVGNELPGANGGDKAPTP ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC KDATNKNEETTNYEISRVTKTEIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPRTPAEI CCCCCCCCCCCCEEEEHHHHHHHCCCCCEEEEEEEEEECCHHCCCCCCCCCCCCCCHHHH ERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEPTLIESLLAPTKDDVLRMAEL HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH AVLALLTLIVLLTVVRPLVRQVLAPVPEAPALTASGLAIPGDAAVVAGPGGTVTVIDRDS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEEECCCCEEEEEECCC PTARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQEE CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8002583; 11259647 [H]