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The map label for this gene is ydcR [C]

Identifier: 170746692

GI number: 170746692

Start: 263369

End: 264808

Strand: Reverse

Name: ydcR [C]

Synonym: Mrad2831_0243

Alternate gene names: 170746692

Gene position: 264808-263369 (Counterclockwise)

Preceding gene: 170746704

Following gene: 170746691

Centisome position: 4.36

GC content: 73.96

Gene sequence:

>1440_bases
ATGAGGGCGAGCGGGCGGGGAGTTCGGTCCGTCGATAGGGGCGGCGCGGACAATGTCTGGACGCCCGACCTCAAGCGCTG
GGGCAAGCCCCATTACCTCGCTATCGCGGACGCGCTGGCGGACGATATCCGGACCGGTCACCTGCTGCCGGGCACGCGCC
TGCCGACCCAGCGCGCGCTCGCCGCCACGCTCGACCTCAACTTCACGACCGTGTCCCGCGGCTATGTCGAGGCTCACAGG
CGCGGCCTGATCGAGGGGCGGGTCGGCCGGGGCACCTTCGTGGTCGACCCGGCGGACACGACCCGTCCCGCTGAGGCCGC
GCACGCCCGGCGGCCCGGACCGGTCGACTTCACCATGAACCTGCCCCCGGAGCCCGACCTGCCGGGCCTGCAGGCCCGCA
TGCGGTCGTCCTTCGCGGAGCTGTCCGGCAATCTCGCCGACCTGCTGCGCTACCAGGGCTTCGGCGGGACGGAGGCGGAC
AAGGAGGCCGCGCTGCGCTGGCTCGGGGGTCGCGGGATCGTCGCGGCGCGCGAGCGCCTCCTGATCTGCCCGGGCACGCA
CAGCGCCCTCTCCAGCATCCTGGGACAGGTCGCGCAGGCCGGCGATACCATCTGCGCCGAGCGCATCACCTATCCGGGCA
TCCGGACCCTCGCGGCGCATCGGGGCCTGCGCCTCGTCGGCCTGCCGATGGACCGCCACGGGATCGACCCCGACGCCTTC
GCGGCCGCCTGTACCCGCGGCGCGCCGAAGGCCCTCTACCTCAATCCGCTCCTTCAGAACCCGACCACGGCGACCCTATC
CCGCGCGCGGCGCGACGCCATCGTGGCCACAGCCCGCCGCTACGCGGTCACGATCATCGAGGACGACGCCTACGCGCGGA
TCTGCCCGGCACCGCCGCCGAGCTTCGCCGAACTGGCGCCCGAGATCACCTACTACGTGGCGGGCGTCGCGAAGTGCCTG
GGCGCGGGGCTCCGCCTGGCCTTCCTGGTCGCGCCGAACGCGCGGGCCGCCCTGCCCCTCGGCGATGCCCTGCGCGCTGC
GACCGTGATGGCGTCGCCGATCTCGACCGCGCTGACCACGCGCTGGATCGTGGACGGGACGGCGGACGCCATCGTGGACT
TCGTCCGCGCCGAGTCGGCCGCGCGCCAGAGCCTCGCGGCCGCGCTGCTGCCCGCCGAGGCCTACGTCGCGGACCCGCAC
GCCTTCCACGTCTGGATCACCCTGCCGGCTGGATGGACGCGCTCGGCCTTCGCCAGCCAGGGCCGCGCGGCGGGTCTCGG
GGTGGTCGGCAGCGATCCCTTCTGCGTCGCCGGAGCGCCACCCGAGGCCGTCCGGCTCTGCCTCGGAGGCCCCTCGACCC
GACAGCAGATCGCCCACGGCCTGGAGAGACTGGCCCACGCCCTGGACGGCTCGCCGGCGCTCGCTTCGACCTACATCTGA

Upstream 100 bases:

>100_bases
GGATCGTATGAGCCGTGACACGCGATGCGCCGCCCGGTACGGTGCTTGCAAGCCATACAATCGATCATTGATCGCTTTTC
ACGACGCGGGTGCAGGACGG

Downstream 100 bases:

>100_bases
GCCGCCCGGCCGCGTTCCCACGCCCAAGGATCGTGGTCGGCAGAATCTTTCCGGCGTGTCGCGTCCAGCTCGCGTCGCGC
GGGCGGTGCGCCGAGCTGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MRASGRGVRSVDRGGADNVWTPDLKRWGKPHYLAIADALADDIRTGHLLPGTRLPTQRALAATLDLNFTTVSRGYVEAHR
RGLIEGRVGRGTFVVDPADTTRPAEAAHARRPGPVDFTMNLPPEPDLPGLQARMRSSFAELSGNLADLLRYQGFGGTEAD
KEAALRWLGGRGIVAARERLLICPGTHSALSSILGQVAQAGDTICAERITYPGIRTLAAHRGLRLVGLPMDRHGIDPDAF
AAACTRGAPKALYLNPLLQNPTTATLSRARRDAIVATARRYAVTIIEDDAYARICPAPPPSFAELAPEITYYVAGVAKCL
GAGLRLAFLVAPNARAALPLGDALRAATVMASPISTALTTRWIVDGTADAIVDFVRAESAARQSLAAALLPAEAYVADPH
AFHVWITLPAGWTRSAFASQGRAAGLGVVGSDPFCVAGAPPEAVRLCLGGPSTRQQIAHGLERLAHALDGSPALASTYI

Sequences:

>Translated_479_residues
MRASGRGVRSVDRGGADNVWTPDLKRWGKPHYLAIADALADDIRTGHLLPGTRLPTQRALAATLDLNFTTVSRGYVEAHR
RGLIEGRVGRGTFVVDPADTTRPAEAAHARRPGPVDFTMNLPPEPDLPGLQARMRSSFAELSGNLADLLRYQGFGGTEAD
KEAALRWLGGRGIVAARERLLICPGTHSALSSILGQVAQAGDTICAERITYPGIRTLAAHRGLRLVGLPMDRHGIDPDAF
AAACTRGAPKALYLNPLLQNPTTATLSRARRDAIVATARRYAVTIIEDDAYARICPAPPPSFAELAPEITYYVAGVAKCL
GAGLRLAFLVAPNARAALPLGDALRAATVMASPISTALTTRWIVDGTADAIVDFVRAESAARQSLAAALLPAEAYVADPH
AFHVWITLPAGWTRSAFASQGRAAGLGVVGSDPFCVAGAPPEAVRLCLGGPSTRQQIAHGLERLAHALDGSPALASTYI
>Mature_479_residues
MRASGRGVRSVDRGGADNVWTPDLKRWGKPHYLAIADALADDIRTGHLLPGTRLPTQRALAATLDLNFTTVSRGYVEAHR
RGLIEGRVGRGTFVVDPADTTRPAEAAHARRPGPVDFTMNLPPEPDLPGLQARMRSSFAELSGNLADLLRYQGFGGTEAD
KEAALRWLGGRGIVAARERLLICPGTHSALSSILGQVAQAGDTICAERITYPGIRTLAAHRGLRLVGLPMDRHGIDPDAF
AAACTRGAPKALYLNPLLQNPTTATLSRARRDAIVATARRYAVTIIEDDAYARICPAPPPSFAELAPEITYYVAGVAKCL
GAGLRLAFLVAPNARAALPLGDALRAATVMASPISTALTTRWIVDGTADAIVDFVRAESAARQSLAAALLPAEAYVADPH
AFHVWITLPAGWTRSAFASQGRAAGLGVVGSDPFCVAGAPPEAVRLCLGGPSTRQQIAHGLERLAHALDGSPALASTYI

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=411, Percent_Identity=26.7639902676399, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1790797, Length=448, Percent_Identity=22.5446428571429, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50543; Mature: 50543

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASGRGVRSVDRGGADNVWTPDLKRWGKPHYLAIADALADDIRTGHLLPGTRLPTQRAL
CCCCCCCCCHHCCCCCCCCCCCCHHHCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHH
AATLDLNFTTVSRGYVEAHRRGLIEGRVGRGTFVVDPADTTRPAEAAHARRPGPVDFTMN
EEEEECCEEEEHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEEC
LPPEPDLPGLQARMRSSFAELSGNLADLLRYQGFGGTEADKEAALRWLGGRGIVAARERL
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEECCEE
LICPGTHSALSSILGQVAQAGDTICAERITYPGIRTLAAHRGLRLVGLPMDRHGIDPDAF
EECCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHCCCEEEECCCCCCCCCHHHH
AAACTRGAPKALYLNPLLQNPTTATLSRARRDAIVATARRYAVTIIEDDAYARICPAPPP
HHHHHCCCCCEEEECHHHCCCCHHHHHHHHHHHHHHHHCEEEEEEEECCCCEEECCCCCC
SFAELAPEITYYVAGVAKCLGAGLRLAFLVAPNARAALPLGDALRAATVMASPISTALTT
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RWIVDGTADAIVDFVRAESAARQSLAAALLPAEAYVADPHAFHVWITLPAGWTRSAFASQ
HEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCEEEEEEEECCCCCHHHHHHC
GRAAGLGVVGSDPFCVAGAPPEAVRLCLGGPSTRQQIAHGLERLAHALDGSPALASTYI
CCCCCEEEECCCCEEEECCCHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCC
>Mature Secondary Structure
MRASGRGVRSVDRGGADNVWTPDLKRWGKPHYLAIADALADDIRTGHLLPGTRLPTQRAL
CCCCCCCCCHHCCCCCCCCCCCCHHHCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHH
AATLDLNFTTVSRGYVEAHRRGLIEGRVGRGTFVVDPADTTRPAEAAHARRPGPVDFTMN
EEEEECCEEEEHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEEC
LPPEPDLPGLQARMRSSFAELSGNLADLLRYQGFGGTEADKEAALRWLGGRGIVAARERL
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEECCEE
LICPGTHSALSSILGQVAQAGDTICAERITYPGIRTLAAHRGLRLVGLPMDRHGIDPDAF
EECCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHCCCEEEECCCCCCCCCHHHH
AAACTRGAPKALYLNPLLQNPTTATLSRARRDAIVATARRYAVTIIEDDAYARICPAPPP
HHHHHCCCCCEEEECHHHCCCCHHHHHHHHHHHHHHHHCEEEEEEEECCCCEEECCCCCC
SFAELAPEITYYVAGVAKCLGAGLRLAFLVAPNARAALPLGDALRAATVMASPISTALTT
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RWIVDGTADAIVDFVRAESAARQSLAAALLPAEAYVADPHAFHVWITLPAGWTRSAFASQ
HEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCEEEEEEEECCCCCHHHHHHC
GRAAGLGVVGSDPFCVAGAPPEAVRLCLGGPSTRQQIAHGLERLAHALDGSPALASTYI
CCCCCEEEECCCCEEEECCCHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]