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The map label for this gene is yrvN [H]

Identifier: 170762441

GI number: 170762441

Start: 238600

End: 239826

Strand: Direct

Name: yrvN [H]

Synonym: UPA3_0202

Alternate gene names: 170762441

Gene position: 238600-239826 (Clockwise)

Preceding gene: 170762351

Following gene: 170761906

Centisome position: 31.74

GC content: 26.57

Gene sequence:

>1227_bases
ATGTTAGATAAATTAATTAAAACTCTAAAAAATCCTCATAGTATTGATGACATTGTTGGTCAAAAATATTTATTAGATGA
AATTGGTATAATTAGAAGAATGGTTAATCACCATCAAGTATTTAATTTAATTTTTTATGGCCCCCCAGGTGTAGGAAAAT
CATCGCTTGCTAAAGTTTTAGCACAAGATTTAAAAGTTCCATTTGCTTTTTTCAATCCAGTTGTTGATTCAAAAAAGCAA
TTAATGCAAATCATTGAACAAGCATTAGATTTAAATAACTTTATTATCATTATTGATGAAATTCATCGATTAAATAAAGA
TAAACAAGATATTTTATTACCAATTATTGAAGCAAATAAAATTAAATTATTTGCGACAACAACTGAAAATCCGTTTTTTG
TTATTAACCCTGCTTTAAGAAGTCGTTGTCAACTATTATCATTAAAACCATTAACGAGTTCACAAATTAGTGAACGAATT
AAAACTTTGATTAATGTTGAAGAAGTTTTTGAACCACAAGCTTTTAATTTATTAATTAATAAAACTAATGGAGATTTAAG
GGCTGTTATCAATACATTAGAAATTATTTATTTATTATATAAAGAACATAAAGTTGATTATGTATTACTAAAACGTATTA
TGCAAGAATCATACGCATTAGGTAGTAGCGATGGCGATGAAATTCATGACTTAAAATCAGCTTTTCATAAATCAATGCGT
GGAAGTGATTGTGATGCAGCTTTATATTATTTAGCACGTTTAATAATCATAGGTGATTTTGAAGCGATTTATCGAAGAGT
TAGTGTTTGTGTTCATGAAGATATAGGTTTAGCTAATCCTAATCTATGTTTACGTGTTGATCAAGGAATTAATTCTTGTC
GATTTTTAGGATATCCAGAAAATCAAGTAATTTTAGCTAATTTAGTTTTACAAATTTGTTTATCAAATAAATCAAACTCT
GTATATCTTGCCTATCAAAAAGCATTTGAAGATGCTGCTAATGGCAAACAATATTCAATTCCAAATCATGTCCGTGATGC
TCATTATGCATCAGCAATAAAATTGGGTGTTCATGGTTATAAATATCCACACGATTTTAAAAATAACTATGTTAATCAAC
AATATTTACCACGTGAATTAACAAACAAAAAATATTATGTTCCCCAAAACAACGAACAAGAGTTTAAATTAAACCAAAAT
CAACAAAAATTTAAAAATAATAATTAA

Upstream 100 bases:

>100_bases
AAACAAAATTTTAAATTAAAAGATGCTTGTAAAGAAGTTAGTAAATCTTCTAATTTTGATAGTAAAGAATTATATAAATT
AATAATTAATCAAAAATAAT

Downstream 100 bases:

>100_bases
AAATTTTAAGGAGAAAAATATGTTAAAACAAAAGAAATTTTTTATCTCTACTCCCATTTACTATTCTTCTGGAAATCCTC
ATATTGGTCATGCTTATACA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MLDKLIKTLKNPHSIDDIVGQKYLLDEIGIIRRMVNHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPFAFFNPVVDSKKQ
LMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLFATTTENPFFVINPALRSRCQLLSLKPLTSSQISERI
KTLINVEEVFEPQAFNLLINKTNGDLRAVINTLEIIYLLYKEHKVDYVLLKRIMQESYALGSSDGDEIHDLKSAFHKSMR
GSDCDAALYYLARLIIIGDFEAIYRRVSVCVHEDIGLANPNLCLRVDQGINSCRFLGYPENQVILANLVLQICLSNKSNS
VYLAYQKAFEDAANGKQYSIPNHVRDAHYASAIKLGVHGYKYPHDFKNNYVNQQYLPRELTNKKYYVPQNNEQEFKLNQN
QQKFKNNN

Sequences:

>Translated_408_residues
MLDKLIKTLKNPHSIDDIVGQKYLLDEIGIIRRMVNHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPFAFFNPVVDSKKQ
LMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLFATTTENPFFVINPALRSRCQLLSLKPLTSSQISERI
KTLINVEEVFEPQAFNLLINKTNGDLRAVINTLEIIYLLYKEHKVDYVLLKRIMQESYALGSSDGDEIHDLKSAFHKSMR
GSDCDAALYYLARLIIIGDFEAIYRRVSVCVHEDIGLANPNLCLRVDQGINSCRFLGYPENQVILANLVLQICLSNKSNS
VYLAYQKAFEDAANGKQYSIPNHVRDAHYASAIKLGVHGYKYPHDFKNNYVNQQYLPRELTNKKYYVPQNNEQEFKLNQN
QQKFKNNN
>Mature_408_residues
MLDKLIKTLKNPHSIDDIVGQKYLLDEIGIIRRMVNHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPFAFFNPVVDSKKQ
LMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLFATTTENPFFVINPALRSRCQLLSLKPLTSSQISERI
KTLINVEEVFEPQAFNLLINKTNGDLRAVINTLEIIYLLYKEHKVDYVLLKRIMQESYALGSSDGDEIHDLKSAFHKSMR
GSDCDAALYYLARLIIIGDFEAIYRRVSVCVHEDIGLANPNLCLRVDQGINSCRFLGYPENQVILANLVLQICLSNKSNS
VYLAYQKAFEDAANGKQYSIPNHVRDAHYASAIKLGVHGYKYPHDFKNNYVNQQYLPRELTNKKYYVPQNNEQEFKLNQN
QQKFKNNN

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=436, Percent_Identity=31.1926605504587, Blast_Score=184, Evalue=9e-47,
Organism=Homo sapiens, GI18426904, Length=415, Percent_Identity=29.8795180722892, Blast_Score=146, Evalue=4e-35,
Organism=Escherichia coli, GI1787119, Length=408, Percent_Identity=31.3725490196078, Blast_Score=202, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI71986063, Length=206, Percent_Identity=24.2718446601942, Blast_Score=68, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=418, Percent_Identity=31.3397129186603, Blast_Score=173, Evalue=6e-44,
Organism=Saccharomyces cerevisiae, GI6324039, Length=197, Percent_Identity=27.9187817258883, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19921076, Length=254, Percent_Identity=28.740157480315, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46831; Mature: 46831

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKLIKTLKNPHSIDDIVGQKYLLDEIGIIRRMVNHHQVFNLIFYGPPGVGKSSLAKVL
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHH
AQDLKVPFAFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANK
HHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCHHHEEEEEECCE
IKLFATTTENPFFVINPALRSRCQLLSLKPLTSSQISERIKTLINVEEVFEPQAFNLLIN
EEEEEEECCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHCCCEEEEEEE
KTNGDLRAVINTLEIIYLLYKEHKVDYVLLKRIMQESYALGSSDGDEIHDLKSAFHKSMR
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
GSDCDAALYYLARLIIIGDFEAIYRRVSVCVHEDIGLANPNLCLRVDQGINSCRFLGYPE
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEECCCCC
NQVILANLVLQICLSNKSNSVYLAYQKAFEDAANGKQYSIPNHVRDAHYASAIKLGVHGY
CCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCC
KYPHDFKNNYVNQQYLPRELTNKKYYVPQNNEQEFKLNQNQQKFKNNN
CCCCHHHCCCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MLDKLIKTLKNPHSIDDIVGQKYLLDEIGIIRRMVNHHQVFNLIFYGPPGVGKSSLAKVL
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHH
AQDLKVPFAFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANK
HHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCHHHEEEEEECCE
IKLFATTTENPFFVINPALRSRCQLLSLKPLTSSQISERIKTLINVEEVFEPQAFNLLIN
EEEEEEECCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHCCCEEEEEEE
KTNGDLRAVINTLEIIYLLYKEHKVDYVLLKRIMQESYALGSSDGDEIHDLKSAFHKSMR
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
GSDCDAALYYLARLIIIGDFEAIYRRVSVCVHEDIGLANPNLCLRVDQGINSCRFLGYPE
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEECCCCC
NQVILANLVLQICLSNKSNSVYLAYQKAFEDAANGKQYSIPNHVRDAHYASAIKLGVHGY
CCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCC
KYPHDFKNNYVNQQYLPRELTNKKYYVPQNNEQEFKLNQNQQKFKNNN
CCCCHHHCCCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]