| Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
|---|---|
| Accession | NC_010503 |
| Length | 751,679 |
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The map label for this gene is secA
Identifier: 170762384
GI number: 170762384
Start: 154925
End: 157438
Strand: Direct
Name: secA
Synonym: UPA3_0125
Alternate gene names: 170762384
Gene position: 154925-157438 (Clockwise)
Preceding gene: 170762388
Following gene: 170762298
Centisome position: 20.61
GC content: 27.61
Gene sequence:
>2514_bases ATGAATTTAATATCAAAAATATCCCCCCAAAACCGAATCTTAAATCGCGCTCGATTGATTGCTGAAGAAGTTTTAAAAAA AGAAGAAGAATACGAACATTTTAGCGATCAAGAATTAATTAATAAATCTGATGATATTATTGAATATTTAGCAAATAATA ACCCATTAGATGATAAATTAGTAGAAGCATTATGCATTATTCGTGAAGTGATTTATCGAGTTCATAATAAAAGAGCTTTT AAAGTTCAAATTATTGGTGCAATTATTGTTTATTTTGGTGATTTTGCTGAAATGATGACTGGTGAGGGTAAAACATTAAC TTTAGTTTTAGTTGCTTATTTAAATGCACTTTATAAAAAAGGTGTTCATATGGTAACTGTTAACGAATATCTAGTTAAAG TTGGAGCAGAATTTGCAACACCTGTTTTAAATTTTTTAAATATGTCTGTTGGCCAAATTACAGCTAATATGAATGAGTAT GAAAAACGAAATAATTATAATTGTGATATCACATATACAACTAATTCAGAATTAGGCTTTGATTATTTACGTGATAATAT GGTAACTAATTATGCTAATAAAGTTCAACGGGGCTTATGATTTGCTATTGTTGATGAAGGTGATTCTGTTTTAATTGATG AAGCTCGGACTCCTTTAATCATTTCTGGTGAACCTCAAGAAGAAATTGGAAATTATGTTAAAGCTGATCGTTTTGTAAAA ACATTATATCCACAAGATTTTACTTTAGATCCAGAATCACAATCAGTAGCATTAACAGAAAGTGGCGTTGAAAAAGCACA AAAGTTTTTCAATACTAAAAATTATTATAATTTTGAAAATTCAGATATTATCCACAAAGTTACTAATGCTTTAAGAGCAA ATTTTACTTTTTTTAATGGACGCGAATATATTGTTAAAAAAGATGATGATGGTGAGGATATAATTGCTTTAGTAGATCAA TCTACTGGTAGAATTATGGAAGGAAGAAGTTATAGCGCTGGATTACAACAAGCAATTCAAGCTAAAGAACAAATTAAAAT TGAACCCGAAAATTTAACAGTTGCCACAATCACTTATCAATCATTATTTCGTTTATATAAAAAATTAGCAGCAGTTTCAG GAACAGCTATTACTGAAGCAGAAGAATTTTTAAATATTTATAATATGGTTGTTGTTACAATCCCAACAAATAAACCAATT AAAAGAATTGACCATCCTGATTATGTTTTTGATAATAAAAGAACAAAATGGAAATATGTAATTGCTGATGTTATTCGTCG TCATGAAAATGGCCAACCAATTTTAATTGGAACTGCTAGTGTTGAAGATTCAGAAATTTTACATCAATTACTAGAACGAG TCAATATTCCTCACGAAGTTTTAAATGCTAAAAATCACGCACGCGAAGCTGAAATTATTGCTTGTGCAGGAGAGTATAAA GCAGTTACAATAGCAACAAATATGGCAGGCCGTGGGACTGATATTAAATTATCTCCAGAATCATTAGAAGCTGGAGGATT ATGTGTTATTGGAACCGAACGAAGTGATTCACGTAGAATTGATAATCAGTTAAGAGGACGTGCTGGACGACAAGGTGATA TTGGCGAATCACGTTTTTTTATTTCAATGGAAGATACTTTATTTAGTCGTTTTGCAACCGATAATTTAGCAAAAGCTGAT GATAAATTAAGTGAAGATGTTATTTCAACAAAATTCTTTACACGATTGCTAAATAATACACAAAAAAAAGTTGAGTCGTT AAACTATGACACAAGAAAAAATCTAATTGATTATGATCATGTTTTAAGTAATCAACGCGAATTAATTTACAAACAACGGG ATAAAATTCTTATTTCATCAGATAATAAAGATATTTTATATCGAATGTTAGATAGTGTAATTGATGATTTAATTTATCAA TCACACAATAAACCAAATGAAGACATTATTGACATAAAAAAATTAATTGATTTAGCAACTCAAAACATTTTTTATGACAA TTATTTAAATCAGGACGAATATTATGGGCTTAAGTTTGAACAAATTAAAACTAAATTAAAAAAAGACTGTATTAATTTTT TTGAGCAAAAAGAACAACTAATGACACCGACAATTTTTAATCAAATCTTATCAGAAATTATGATTAGTAATATTGATGAA GAATGAACTAAACATTTAGATATTACTTCTAAAATTCGTGAGGGAGTTAATTTACGTGCTTATGAACAAAAAGCACCATT AAATATTTATGTTGAAGACTCAGATAAATTATTTGAAAAATTAAAACATAATGTTGCTTGAAAAACAGTATGTTCAATAG GAAAAATAAATTATGTTCATCAAGATTATAGTGATTTAAATAGTGAATTTATTGTAAATGATAATGAAATTAATGAAAAT AATAATTCAATTGATTTTGAAAATTTCAACGAATCAATACCAACTGATCAAACAATTCAAGAATCATTTGATGATAATCA ATCAGATAATGAAGATGATAAAAATAATAATTAA
Upstream 100 bases:
>100_bases AAGGTTAAAGATGGTAATATTAATGAATTAATTCGTAATGATCATCCAAAATCAGTTGACGAATTAAAATGAGATGAACA ATAAGAGGACTTAGATTTAA
Downstream 100 bases:
>100_bases CAATGGATGATTTTAAAAAATTTGAATTAATAAGCGATTATAAACCAGCTGGTGACCAACAAAAGGCAATTGATGAAATG GTTAATAATATTAATCAAGG
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 837; Mature: 837
Protein sequence:
>837_residues MNLISKISPQNRILNRARLIAEEVLKKEEEYEHFSDQELINKSDDIIEYLANNNPLDDKLVEALCIIREVIYRVHNKRAF KVQIIGAIIVYFGDFAEMMTGEGKTLTLVLVAYLNALYKKGVHMVTVNEYLVKVGAEFATPVLNFLNMSVGQITANMNEY EKRNNYNCDITYTTNSELGFDYLRDNMVTNYANKVQRGLWFAIVDEGDSVLIDEARTPLIISGEPQEEIGNYVKADRFVK TLYPQDFTLDPESQSVALTESGVEKAQKFFNTKNYYNFENSDIIHKVTNALRANFTFFNGREYIVKKDDDGEDIIALVDQ STGRIMEGRSYSAGLQQAIQAKEQIKIEPENLTVATITYQSLFRLYKKLAAVSGTAITEAEEFLNIYNMVVVTIPTNKPI KRIDHPDYVFDNKRTKWKYVIADVIRRHENGQPILIGTASVEDSEILHQLLERVNIPHEVLNAKNHAREAEIIACAGEYK AVTIATNMAGRGTDIKLSPESLEAGGLCVIGTERSDSRRIDNQLRGRAGRQGDIGESRFFISMEDTLFSRFATDNLAKAD DKLSEDVISTKFFTRLLNNTQKKVESLNYDTRKNLIDYDHVLSNQRELIYKQRDKILISSDNKDILYRMLDSVIDDLIYQ SHNKPNEDIIDIKKLIDLATQNIFYDNYLNQDEYYGLKFEQIKTKLKKDCINFFEQKEQLMTPTIFNQILSEIMISNIDE EWTKHLDITSKIREGVNLRAYEQKAPLNIYVEDSDKLFEKLKHNVAWKTVCSIGKINYVHQDYSDLNSEFIVNDNEINEN NNSIDFENFNESIPTDQTIQESFDDNQSDNEDDKNNN
Sequences:
>Translated_837_residues MNLISKISPQNRILNRARLIAEEVLKKEEEYEHFSDQELINKSDDIIEYLANNNPLDDKLVEALCIIREVIYRVHNKRAF KVQIIGAIIVYFGDFAEMMTGEGKTLTLVLVAYLNALYKKGVHMVTVNEYLVKVGAEFATPVLNFLNMSVGQITANMNEY EKRNNYNCDITYTTNSELGFDYLRDNMVTNYANKVQRGL*FAIVDEGDSVLIDEARTPLIISGEPQEEIGNYVKADRFVK TLYPQDFTLDPESQSVALTESGVEKAQKFFNTKNYYNFENSDIIHKVTNALRANFTFFNGREYIVKKDDDGEDIIALVDQ STGRIMEGRSYSAGLQQAIQAKEQIKIEPENLTVATITYQSLFRLYKKLAAVSGTAITEAEEFLNIYNMVVVTIPTNKPI KRIDHPDYVFDNKRTKWKYVIADVIRRHENGQPILIGTASVEDSEILHQLLERVNIPHEVLNAKNHAREAEIIACAGEYK AVTIATNMAGRGTDIKLSPESLEAGGLCVIGTERSDSRRIDNQLRGRAGRQGDIGESRFFISMEDTLFSRFATDNLAKAD DKLSEDVISTKFFTRLLNNTQKKVESLNYDTRKNLIDYDHVLSNQRELIYKQRDKILISSDNKDILYRMLDSVIDDLIYQ SHNKPNEDIIDIKKLIDLATQNIFYDNYLNQDEYYGLKFEQIKTKLKKDCINFFEQKEQLMTPTIFNQILSEIMISNIDE E*TKHLDITSKIREGVNLRAYEQKAPLNIYVEDSDKLFEKLKHNVA*KTVCSIGKINYVHQDYSDLNSEFIVNDNEINEN NNSIDFENFNESIPTDQTIQESFDDNQSDNEDDKNNN >Mature_837_residues MNLISKISPQNRILNRARLIAEEVLKKEEEYEHFSDQELINKSDDIIEYLANNNPLDDKLVEALCIIREVIYRVHNKRAF KVQIIGAIIVYFGDFAEMMTGEGKTLTLVLVAYLNALYKKGVHMVTVNEYLVKVGAEFATPVLNFLNMSVGQITANMNEY EKRNNYNCDITYTTNSELGFDYLRDNMVTNYANKVQRGL*FAIVDEGDSVLIDEARTPLIISGEPQEEIGNYVKADRFVK TLYPQDFTLDPESQSVALTESGVEKAQKFFNTKNYYNFENSDIIHKVTNALRANFTFFNGREYIVKKDDDGEDIIALVDQ STGRIMEGRSYSAGLQQAIQAKEQIKIEPENLTVATITYQSLFRLYKKLAAVSGTAITEAEEFLNIYNMVVVTIPTNKPI KRIDHPDYVFDNKRTKWKYVIADVIRRHENGQPILIGTASVEDSEILHQLLERVNIPHEVLNAKNHAREAEIIACAGEYK AVTIATNMAGRGTDIKLSPESLEAGGLCVIGTERSDSRRIDNQLRGRAGRQGDIGESRFFISMEDTLFSRFATDNLAKAD DKLSEDVISTKFFTRLLNNTQKKVESLNYDTRKNLIDYDHVLSNQRELIYKQRDKILISSDNKDILYRMLDSVIDDLIYQ SHNKPNEDIIDIKKLIDLATQNIFYDNYLNQDEYYGLKFEQIKTKLKKDCINFFEQKEQLMTPTIFNQILSEIMISNIDE E*TKHLDITSKIREGVNLRAYEQKAPLNIYVEDSDKLFEKLKHNVA*KTVCSIGKINYVHQDYSDLNSEFIVNDNEINEN NNSIDFENFNESIPTDQTIQESFDDNQSDNEDDKNNN
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular mo
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=833, Percent_Identity=40.2160864345738, Blast_Score=543, Evalue=1e-155,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 95705; Mature: 95705
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLISKISPQNRILNRARLIAEEVLKKEEEYEHFSDQELINKSDDIIEYLANNNPLDDKL CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCCCCHHHH VEALCIIREVIYRVHNKRAFKVQIIGAIIVYFGDFAEMMTGEGKTLTLVLVAYLNALYKK HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC GVHMVTVNEYLVKVGAEFATPVLNFLNMSVGQITANMNEYEKRNNYNCDITYTTNSELGF CCEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHCCCCCEEEEEECCCCCCH DYLRDNMVTNYANKVQRGLFAIVDEGDSVLIDEARTPLIISGEPQEEIGNYVKADRFVKT HHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHH LYPQDFTLDPESQSVALTESGVEKAQKFFNTKNYYNFENSDIIHKVTNALRANFTFFNGR HCCCCCEECCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEECCE EYIVKKDDDGEDIIALVDQSTGRIMEGRSYSAGLQQAIQAKEQIKIEPENLTVATITYQS EEEEECCCCCCCEEEEEECCCCCEECCCCHHHHHHHHHHHHHHEEECCCCEEEEEEEHHH LFRLYKKLAAVSGTAITEAEEFLNIYNMVVVTIPTNKPIKRIDHPDYVFDNKRTKWKYVI HHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEEECCCCCHHHCCCCCCEECCCCCHHHHHH ADVIRRHENGQPILIGTASVEDSEILHQLLERVNIPHEVLNAKNHAREAEIIACAGEYKA HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHCCHHCCCCCEEEEECCCCEE VTIATNMAGRGTDIKLSPESLEAGGLCVIGTERSDSRRIDNQLRGRAGRQGDIGESRFFI EEEEECCCCCCCCEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEE SMEDTLFSRFATDNLAKADDKLSEDVISTKFFTRLLNNTQKKVESLNYDTRKNLIDYDHV EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHH LSNQRELIYKQRDKILISSDNKDILYRMLDSVIDDLIYQSHNKPNEDIIDIKKLIDLATQ HCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH NIFYDNYLNQDEYYGLKFEQIKTKLKKDCINFFEQKEQLMTPTIFNQILSEIMISNIDEE HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHH TKHLDITSKIREGVNLRAYEQKAPLNIYVEDSDKLFEKLKHNVAKTVCSIGKINYVHQDY HHHCCHHHHHHCCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH SDLNSEFIVNDNEINENNNSIDFENFNESIPTDQTIQESFDDNQSDNEDDKNNN HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MNLISKISPQNRILNRARLIAEEVLKKEEEYEHFSDQELINKSDDIIEYLANNNPLDDKL CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCCCCHHHH VEALCIIREVIYRVHNKRAFKVQIIGAIIVYFGDFAEMMTGEGKTLTLVLVAYLNALYKK HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC GVHMVTVNEYLVKVGAEFATPVLNFLNMSVGQITANMNEYEKRNNYNCDITYTTNSELGF CCEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHCCCCCEEEEEECCCCCCH DYLRDNMVTNYANKVQRGLFAIVDEGDSVLIDEARTPLIISGEPQEEIGNYVKADRFVKT HHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHH LYPQDFTLDPESQSVALTESGVEKAQKFFNTKNYYNFENSDIIHKVTNALRANFTFFNGR HCCCCCEECCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEECCE EYIVKKDDDGEDIIALVDQSTGRIMEGRSYSAGLQQAIQAKEQIKIEPENLTVATITYQS EEEEECCCCCCCEEEEEECCCCCEECCCCHHHHHHHHHHHHHHEEECCCCEEEEEEEHHH LFRLYKKLAAVSGTAITEAEEFLNIYNMVVVTIPTNKPIKRIDHPDYVFDNKRTKWKYVI HHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEEECCCCCHHHCCCCCCEECCCCCHHHHHH ADVIRRHENGQPILIGTASVEDSEILHQLLERVNIPHEVLNAKNHAREAEIIACAGEYKA HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHCCHHCCCCCEEEEECCCCEE VTIATNMAGRGTDIKLSPESLEAGGLCVIGTERSDSRRIDNQLRGRAGRQGDIGESRFFI EEEEECCCCCCCCEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEE SMEDTLFSRFATDNLAKADDKLSEDVISTKFFTRLLNNTQKKVESLNYDTRKNLIDYDHV EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHH LSNQRELIYKQRDKILISSDNKDILYRMLDSVIDDLIYQSHNKPNEDIIDIKKLIDLATQ HCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH NIFYDNYLNQDEYYGLKFEQIKTKLKKDCINFFEQKEQLMTPTIFNQILSEIMISNIDEE HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHH TKHLDITSKIREGVNLRAYEQKAPLNIYVEDSDKLFEKLKHNVAKTVCSIGKINYVHQDY HHHCCHHHHHHCCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH SDLNSEFIVNDNEINENNNSIDFENFNESIPTDQTIQESFDDNQSDNEDDKNNN HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA