Definition Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome.
Accession NC_010503
Length 751,679

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The map label for this gene is lysS

Identifier: 170762376

GI number: 170762376

Start: 77555

End: 79036

Strand: Direct

Name: lysS

Synonym: UPA3_0061

Alternate gene names: 170762376

Gene position: 77555-79036 (Clockwise)

Preceding gene: 170762453

Following gene: 170761970

Centisome position: 10.32

GC content: 27.4

Gene sequence:

>1482_bases
ATGGAAAGAAAATTTAGTGATCAAGAATTAATCCGTCGTACACACTTACAAGAATTAAAAAACCAAAATAAAAATCCTTT
TTTAATAACAAAAGTTGATAGAAGTATGTTTTTAAAAGACTTTGCTGAAAAATATAAAAATTTTAGCAAAGAAGAATTAC
ATAATATGGATTTAGAGAAATTGACACTTGCTGGTCGTTTAATCGGAATACGTCAAACCTTTGGGATTATTCAAGATTTT
TCAGCAAAGTTACAAATTTATATTAATAAAAAAAATGTTGCTCCAGAGGTTTTTTCAACTTTTAAATCATTAGATATTGG
TGATATTATTGAATTAGAAGGTGTAGCAATGAAAACTAATAGTGATGAAATTACTTTAAATGTTACAAACATTCGATTAG
TTGCTAAAAGTCTAAAAGTTCTCCCTGAAAAGTATCATGGATTGGTTGATGAAGAAATTAAAGCACGTCAACGTTATTTA
GATTTAATTGTTAACGATGAGACAAAAAATACTTTTATAAAACGATCTTTAATTATACGTGAAATGCGTAATTGGTTAGA
TAATAAAGGTTTTTTTGAAGTTGAAACGCCTGTTTTGCAAGATATTTTAAGTGGTGCTGCTGCTCGTCCTTTTATTACAC
ATCATAACACTTTAAATAAAGAATATTATTTAAGAATTGCTACTGAAATTGCTTTAAAAAAGTGTATTATTGGGGGTTTT
GAAAAAGTATATGAAATAGGTAGAATTTTTCGAAATGAGGGAATGGATAGTACTCATAATCCTGAATTTACTTCAGTTGA
ATTATATATTGCATATGTTGATTTATGATATATTATGCAACTAACTGAAGATTTAATTCGTCATATTGCTACTAAATTAA
ACTTATTAAATCCTACATTTAGAGGTTTTAGTATTGATTTAAATAAACCTTTTAAAAAAGCTCATATGGTTGATTTAATT
AATGAATATGTTGGTGTTAATTTTTTTGAAGTTAAAAGCGATGAACAAGCAATTGAATTAGCAAAAAAACACCATGTTAA
ATTATTAGATCATCAAAAAAACTTTGGTCATATCGTTAATGCTTTTTTTGAAACTTTTGTTGAAGAAAAATTAGTTGAAC
CAACATTTGTATATGGTCATCCGTTACAAGTTTCTCCACTTACTAAAAAGAATCAGAGTGATCCTCGTTTTGTAGATCGT
TTTGAATTATTTATTTGTCAAAAAGAATTTGCTAATGCTTATAGTGAAATTAATGATCCAATTGATCAATATGAACGTTT
TATCGCACAGTTAGAAGAAGCTAAATTAGGAAATGACGAAGCAAGTGAATTAGATATGGAATTTATTGAGGCCTTAGAAT
ATGGTATGCCTCCAACAGGTGGTTTGGGAATCGGTGTTGATCGTTTAGTAATGCTGTTAACAAGTAATGATAGTATTCGT
AATGTTTTATTATTTCCTCACATGAAAGATAAAACAAAATAA

Upstream 100 bases:

>100_bases
ATACTATAAAAAATTAATAATAAAACACTTTATATTTATTTAAAATTTTGAATATGAGATAATAAAAAGATAGTGTATTT
TAATAATAGGTAAATTATTT

Downstream 100 bases:

>100_bases
AATTGAAATGGAATTAGTAATATTTTAAAGGTGATATATAAAAACTAATAACAATACTACAAAATGTTAATAAATCAAAC
ATTTTGTATTTTTTTTTATT

Product: lysyl-tRNA synthetase

Products: NA

Alternate protein names: Lysine--tRNA ligase; LysRS [H]

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MERKFSDQELIRRTHLQELKNQNKNPFLITKVDRSMFLKDFAEKYKNFSKEELHNMDLEKLTLAGRLIGIRQTFGIIQDF
SAKLQIYINKKNVAPEVFSTFKSLDIGDIIELEGVAMKTNSDEITLNVTNIRLVAKSLKVLPEKYHGLVDEEIKARQRYL
DLIVNDETKNTFIKRSLIIREMRNWLDNKGFFEVETPVLQDILSGAAARPFITHHNTLNKEYYLRIATEIALKKCIIGGF
EKVYEIGRIFRNEGMDSTHNPEFTSVELYIAYVDLWYIMQLTEDLIRHIATKLNLLNPTFRGFSIDLNKPFKKAHMVDLI
NEYVGVNFFEVKSDEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVYGHPLQVSPLTKKNQSDPRFVDR
FELFICQKEFANAYSEINDPIDQYERFIAQLEEAKLGNDEASELDMEFIEALEYGMPPTGGLGIGVDRLVMLLTSNDSIR
NVLLFPHMKDKTK

Sequences:

>Translated_493_residues
MERKFSDQELIRRTHLQELKNQNKNPFLITKVDRSMFLKDFAEKYKNFSKEELHNMDLEKLTLAGRLIGIRQTFGIIQDF
SAKLQIYINKKNVAPEVFSTFKSLDIGDIIELEGVAMKTNSDEITLNVTNIRLVAKSLKVLPEKYHGLVDEEIKARQRYL
DLIVNDETKNTFIKRSLIIREMRNWLDNKGFFEVETPVLQDILSGAAARPFITHHNTLNKEYYLRIATEIALKKCIIGGF
EKVYEIGRIFRNEGMDSTHNPEFTSVELYIAYVDL*YIMQLTEDLIRHIATKLNLLNPTFRGFSIDLNKPFKKAHMVDLI
NEYVGVNFFEVKSDEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVYGHPLQVSPLTKKNQSDPRFVDR
FELFICQKEFANAYSEINDPIDQYERFIAQLEEAKLGNDEASELDMEFIEALEYGMPPTGGLGIGVDRLVMLLTSNDSIR
NVLLFPHMKDKTK
>Mature_493_residues
MERKFSDQELIRRTHLQELKNQNKNPFLITKVDRSMFLKDFAEKYKNFSKEELHNMDLEKLTLAGRLIGIRQTFGIIQDF
SAKLQIYINKKNVAPEVFSTFKSLDIGDIIELEGVAMKTNSDEITLNVTNIRLVAKSLKVLPEKYHGLVDEEIKARQRYL
DLIVNDETKNTFIKRSLIIREMRNWLDNKGFFEVETPVLQDILSGAAARPFITHHNTLNKEYYLRIATEIALKKCIIGGF
EKVYEIGRIFRNEGMDSTHNPEFTSVELYIAYVDL*YIMQLTEDLIRHIATKLNLLNPTFRGFSIDLNKPFKKAHMVDLI
NEYVGVNFFEVKSDEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVYGHPLQVSPLTKKNQSDPRFVDR
FELFICQKEFANAYSEINDPIDQYERFIAQLEEAKLGNDEASELDMEFIEALEYGMPPTGGLGIGVDRLVMLLTSNDSIR
NVLLFPHMKDKTK

Specific function: Also Can Synthesize A Number Of Adenyl Dinucleotides (In Particular Appppa). These Dinucleotides Have Been Proposed To Act As Modulators Of The Heat-Shock Response And Stress Response. [C]

COG id: COG1190

COG function: function code J; Lysyl-tRNA synthetase (class II)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]

Homologues:

Organism=Homo sapiens, GI194272210, Length=503, Percent_Identity=37.375745526839, Blast_Score=325, Evalue=5e-89,
Organism=Homo sapiens, GI5031815, Length=503, Percent_Identity=37.375745526839, Blast_Score=325, Evalue=6e-89,
Organism=Homo sapiens, GI45439306, Length=417, Percent_Identity=23.2613908872902, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI40789249, Length=243, Percent_Identity=26.3374485596708, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI1790571, Length=495, Percent_Identity=40.6060606060606, Blast_Score=381, Evalue=1e-107,
Organism=Escherichia coli, GI1789256, Length=452, Percent_Identity=43.5840707964602, Blast_Score=380, Evalue=1e-106,
Organism=Escherichia coli, GI87082379, Length=323, Percent_Identity=28.1733746130031, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1788173, Length=169, Percent_Identity=24.8520710059172, Blast_Score=66, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17535925, Length=502, Percent_Identity=39.0438247011952, Blast_Score=341, Evalue=6e-94,
Organism=Caenorhabditis elegans, GI71994340, Length=502, Percent_Identity=39.0438247011952, Blast_Score=341, Evalue=6e-94,
Organism=Caenorhabditis elegans, GI17535927, Length=502, Percent_Identity=39.0438247011952, Blast_Score=340, Evalue=7e-94,
Organism=Caenorhabditis elegans, GI17551876, Length=317, Percent_Identity=25.8675078864353, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI32566633, Length=240, Percent_Identity=24.1666666666667, Blast_Score=70, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6320242, Length=507, Percent_Identity=37.8698224852071, Blast_Score=325, Evalue=1e-89,
Organism=Saccharomyces cerevisiae, GI6324256, Length=501, Percent_Identity=32.5349301397206, Blast_Score=194, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6323011, Length=478, Percent_Identity=22.5941422594142, Blast_Score=91, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24640851, Length=501, Percent_Identity=39.1217564870259, Blast_Score=338, Evalue=4e-93,
Organism=Drosophila melanogaster, GI24640849, Length=501, Percent_Identity=39.1217564870259, Blast_Score=338, Evalue=6e-93,
Organism=Drosophila melanogaster, GI17136276, Length=354, Percent_Identity=24.0112994350282, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24584738, Length=267, Percent_Identity=26.5917602996255, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004364
- InterPro:   IPR018150
- InterPro:   IPR006195
- InterPro:   IPR002313
- InterPro:   IPR018149
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF00152 tRNA-synt_2; PF01336 tRNA_anti [H]

EC number: =6.1.1.6 [H]

Molecular weight: Translated: 57100; Mature: 57100

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50862 AA_TRNA_LIGASE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERKFSDQELIRRTHLQELKNQNKNPFLITKVDRSMFLKDFAEKYKNFSKEELHNMDLEK
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHCCCHHH
LTLAGRLIGIRQTFGIIQDFSAKLQIYINKKNVAPEVFSTFKSLDIGDIIELEGVAMKTN
HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEECCEEEECC
SDEITLNVTNIRLVAKSLKVLPEKYHGLVDEEIKARQRYLDLIVNDETKNTFIKRSLIIR
CCEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EMRNWLDNKGFFEVETPVLQDILSGAAARPFITHHNTLNKEYYLRIATEIALKKCIIGGF
HHHHHHCCCCCEEECCHHHHHHHCCCCCCCEEECCCCCCCHHEEHHHHHHHHHHHHHHHH
EKVYEIGRIFRNEGMDSTHNPEFTSVELYIAYVDLYIMQLTEDLIRHIATKLNLLNPTFR
HHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GFSIDLNKPFKKAHMVDLINEYVGVNFFEVKSDEQAIELAKKHHVKLLDHQKNFGHIVNA
CEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
FFETFVEEKLVEPTFVYGHPLQVSPLTKKNQSDPRFVDRFELFICQKEFANAYSEINDPI
HHHHHHHHHHCCCEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
DQYERFIAQLEEAKLGNDEASELDMEFIEALEYGMPPTGGLGIGVDRLVMLLTSNDSIRN
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEECCCCCCE
VLLFPHMKDKTK
EEEECCCCCCCC
>Mature Secondary Structure
MERKFSDQELIRRTHLQELKNQNKNPFLITKVDRSMFLKDFAEKYKNFSKEELHNMDLEK
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHCCCHHH
LTLAGRLIGIRQTFGIIQDFSAKLQIYINKKNVAPEVFSTFKSLDIGDIIELEGVAMKTN
HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEECCEEEECC
SDEITLNVTNIRLVAKSLKVLPEKYHGLVDEEIKARQRYLDLIVNDETKNTFIKRSLIIR
CCEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EMRNWLDNKGFFEVETPVLQDILSGAAARPFITHHNTLNKEYYLRIATEIALKKCIIGGF
HHHHHHCCCCCEEECCHHHHHHHCCCCCCCEEECCCCCCCHHEEHHHHHHHHHHHHHHHH
EKVYEIGRIFRNEGMDSTHNPEFTSVELYIAYVDLYIMQLTEDLIRHIATKLNLLNPTFR
HHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GFSIDLNKPFKKAHMVDLINEYVGVNFFEVKSDEQAIELAKKHHVKLLDHQKNFGHIVNA
CEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
FFETFVEEKLVEPTFVYGHPLQVSPLTKKNQSDPRFVDRFELFICQKEFANAYSEINDPI
HHHHHHHHHHCCCEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
DQYERFIAQLEEAKLGNDEASELDMEFIEALEYGMPPTGGLGIGVDRLVMLLTSNDSIRN
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEECCCCCCE
VLLFPHMKDKTK
EEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA