Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
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Accession | NC_010503 |
Length | 751,679 |
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The map label for this gene is lysS
Identifier: 170762376
GI number: 170762376
Start: 77555
End: 79036
Strand: Direct
Name: lysS
Synonym: UPA3_0061
Alternate gene names: 170762376
Gene position: 77555-79036 (Clockwise)
Preceding gene: 170762453
Following gene: 170761970
Centisome position: 10.32
GC content: 27.4
Gene sequence:
>1482_bases ATGGAAAGAAAATTTAGTGATCAAGAATTAATCCGTCGTACACACTTACAAGAATTAAAAAACCAAAATAAAAATCCTTT TTTAATAACAAAAGTTGATAGAAGTATGTTTTTAAAAGACTTTGCTGAAAAATATAAAAATTTTAGCAAAGAAGAATTAC ATAATATGGATTTAGAGAAATTGACACTTGCTGGTCGTTTAATCGGAATACGTCAAACCTTTGGGATTATTCAAGATTTT TCAGCAAAGTTACAAATTTATATTAATAAAAAAAATGTTGCTCCAGAGGTTTTTTCAACTTTTAAATCATTAGATATTGG TGATATTATTGAATTAGAAGGTGTAGCAATGAAAACTAATAGTGATGAAATTACTTTAAATGTTACAAACATTCGATTAG TTGCTAAAAGTCTAAAAGTTCTCCCTGAAAAGTATCATGGATTGGTTGATGAAGAAATTAAAGCACGTCAACGTTATTTA GATTTAATTGTTAACGATGAGACAAAAAATACTTTTATAAAACGATCTTTAATTATACGTGAAATGCGTAATTGGTTAGA TAATAAAGGTTTTTTTGAAGTTGAAACGCCTGTTTTGCAAGATATTTTAAGTGGTGCTGCTGCTCGTCCTTTTATTACAC ATCATAACACTTTAAATAAAGAATATTATTTAAGAATTGCTACTGAAATTGCTTTAAAAAAGTGTATTATTGGGGGTTTT GAAAAAGTATATGAAATAGGTAGAATTTTTCGAAATGAGGGAATGGATAGTACTCATAATCCTGAATTTACTTCAGTTGA ATTATATATTGCATATGTTGATTTATGATATATTATGCAACTAACTGAAGATTTAATTCGTCATATTGCTACTAAATTAA ACTTATTAAATCCTACATTTAGAGGTTTTAGTATTGATTTAAATAAACCTTTTAAAAAAGCTCATATGGTTGATTTAATT AATGAATATGTTGGTGTTAATTTTTTTGAAGTTAAAAGCGATGAACAAGCAATTGAATTAGCAAAAAAACACCATGTTAA ATTATTAGATCATCAAAAAAACTTTGGTCATATCGTTAATGCTTTTTTTGAAACTTTTGTTGAAGAAAAATTAGTTGAAC CAACATTTGTATATGGTCATCCGTTACAAGTTTCTCCACTTACTAAAAAGAATCAGAGTGATCCTCGTTTTGTAGATCGT TTTGAATTATTTATTTGTCAAAAAGAATTTGCTAATGCTTATAGTGAAATTAATGATCCAATTGATCAATATGAACGTTT TATCGCACAGTTAGAAGAAGCTAAATTAGGAAATGACGAAGCAAGTGAATTAGATATGGAATTTATTGAGGCCTTAGAAT ATGGTATGCCTCCAACAGGTGGTTTGGGAATCGGTGTTGATCGTTTAGTAATGCTGTTAACAAGTAATGATAGTATTCGT AATGTTTTATTATTTCCTCACATGAAAGATAAAACAAAATAA
Upstream 100 bases:
>100_bases ATACTATAAAAAATTAATAATAAAACACTTTATATTTATTTAAAATTTTGAATATGAGATAATAAAAAGATAGTGTATTT TAATAATAGGTAAATTATTT
Downstream 100 bases:
>100_bases AATTGAAATGGAATTAGTAATATTTTAAAGGTGATATATAAAAACTAATAACAATACTACAAAATGTTAATAAATCAAAC ATTTTGTATTTTTTTTTATT
Product: lysyl-tRNA synthetase
Products: NA
Alternate protein names: Lysine--tRNA ligase; LysRS [H]
Number of amino acids: Translated: 493; Mature: 493
Protein sequence:
>493_residues MERKFSDQELIRRTHLQELKNQNKNPFLITKVDRSMFLKDFAEKYKNFSKEELHNMDLEKLTLAGRLIGIRQTFGIIQDF SAKLQIYINKKNVAPEVFSTFKSLDIGDIIELEGVAMKTNSDEITLNVTNIRLVAKSLKVLPEKYHGLVDEEIKARQRYL DLIVNDETKNTFIKRSLIIREMRNWLDNKGFFEVETPVLQDILSGAAARPFITHHNTLNKEYYLRIATEIALKKCIIGGF EKVYEIGRIFRNEGMDSTHNPEFTSVELYIAYVDLWYIMQLTEDLIRHIATKLNLLNPTFRGFSIDLNKPFKKAHMVDLI NEYVGVNFFEVKSDEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVYGHPLQVSPLTKKNQSDPRFVDR FELFICQKEFANAYSEINDPIDQYERFIAQLEEAKLGNDEASELDMEFIEALEYGMPPTGGLGIGVDRLVMLLTSNDSIR NVLLFPHMKDKTK
Sequences:
>Translated_493_residues MERKFSDQELIRRTHLQELKNQNKNPFLITKVDRSMFLKDFAEKYKNFSKEELHNMDLEKLTLAGRLIGIRQTFGIIQDF SAKLQIYINKKNVAPEVFSTFKSLDIGDIIELEGVAMKTNSDEITLNVTNIRLVAKSLKVLPEKYHGLVDEEIKARQRYL DLIVNDETKNTFIKRSLIIREMRNWLDNKGFFEVETPVLQDILSGAAARPFITHHNTLNKEYYLRIATEIALKKCIIGGF EKVYEIGRIFRNEGMDSTHNPEFTSVELYIAYVDL*YIMQLTEDLIRHIATKLNLLNPTFRGFSIDLNKPFKKAHMVDLI NEYVGVNFFEVKSDEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVYGHPLQVSPLTKKNQSDPRFVDR FELFICQKEFANAYSEINDPIDQYERFIAQLEEAKLGNDEASELDMEFIEALEYGMPPTGGLGIGVDRLVMLLTSNDSIR NVLLFPHMKDKTK >Mature_493_residues MERKFSDQELIRRTHLQELKNQNKNPFLITKVDRSMFLKDFAEKYKNFSKEELHNMDLEKLTLAGRLIGIRQTFGIIQDF SAKLQIYINKKNVAPEVFSTFKSLDIGDIIELEGVAMKTNSDEITLNVTNIRLVAKSLKVLPEKYHGLVDEEIKARQRYL DLIVNDETKNTFIKRSLIIREMRNWLDNKGFFEVETPVLQDILSGAAARPFITHHNTLNKEYYLRIATEIALKKCIIGGF EKVYEIGRIFRNEGMDSTHNPEFTSVELYIAYVDL*YIMQLTEDLIRHIATKLNLLNPTFRGFSIDLNKPFKKAHMVDLI NEYVGVNFFEVKSDEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVYGHPLQVSPLTKKNQSDPRFVDR FELFICQKEFANAYSEINDPIDQYERFIAQLEEAKLGNDEASELDMEFIEALEYGMPPTGGLGIGVDRLVMLLTSNDSIR NVLLFPHMKDKTK
Specific function: Also Can Synthesize A Number Of Adenyl Dinucleotides (In Particular Appppa). These Dinucleotides Have Been Proposed To Act As Modulators Of The Heat-Shock Response And Stress Response. [C]
COG id: COG1190
COG function: function code J; Lysyl-tRNA synthetase (class II)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI194272210, Length=503, Percent_Identity=37.375745526839, Blast_Score=325, Evalue=5e-89, Organism=Homo sapiens, GI5031815, Length=503, Percent_Identity=37.375745526839, Blast_Score=325, Evalue=6e-89, Organism=Homo sapiens, GI45439306, Length=417, Percent_Identity=23.2613908872902, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI40789249, Length=243, Percent_Identity=26.3374485596708, Blast_Score=79, Evalue=1e-14, Organism=Escherichia coli, GI1790571, Length=495, Percent_Identity=40.6060606060606, Blast_Score=381, Evalue=1e-107, Organism=Escherichia coli, GI1789256, Length=452, Percent_Identity=43.5840707964602, Blast_Score=380, Evalue=1e-106, Organism=Escherichia coli, GI87082379, Length=323, Percent_Identity=28.1733746130031, Blast_Score=125, Evalue=6e-30, Organism=Escherichia coli, GI1788173, Length=169, Percent_Identity=24.8520710059172, Blast_Score=66, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17535925, Length=502, Percent_Identity=39.0438247011952, Blast_Score=341, Evalue=6e-94, Organism=Caenorhabditis elegans, GI71994340, Length=502, Percent_Identity=39.0438247011952, Blast_Score=341, Evalue=6e-94, Organism=Caenorhabditis elegans, GI17535927, Length=502, Percent_Identity=39.0438247011952, Blast_Score=340, Evalue=7e-94, Organism=Caenorhabditis elegans, GI17551876, Length=317, Percent_Identity=25.8675078864353, Blast_Score=82, Evalue=7e-16, Organism=Caenorhabditis elegans, GI32566633, Length=240, Percent_Identity=24.1666666666667, Blast_Score=70, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6320242, Length=507, Percent_Identity=37.8698224852071, Blast_Score=325, Evalue=1e-89, Organism=Saccharomyces cerevisiae, GI6324256, Length=501, Percent_Identity=32.5349301397206, Blast_Score=194, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6323011, Length=478, Percent_Identity=22.5941422594142, Blast_Score=91, Evalue=3e-19, Organism=Drosophila melanogaster, GI24640851, Length=501, Percent_Identity=39.1217564870259, Blast_Score=338, Evalue=4e-93, Organism=Drosophila melanogaster, GI24640849, Length=501, Percent_Identity=39.1217564870259, Blast_Score=338, Evalue=6e-93, Organism=Drosophila melanogaster, GI17136276, Length=354, Percent_Identity=24.0112994350282, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI24584738, Length=267, Percent_Identity=26.5917602996255, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004364 - InterPro: IPR018150 - InterPro: IPR006195 - InterPro: IPR002313 - InterPro: IPR018149 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00152 tRNA-synt_2; PF01336 tRNA_anti [H]
EC number: =6.1.1.6 [H]
Molecular weight: Translated: 57100; Mature: 57100
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERKFSDQELIRRTHLQELKNQNKNPFLITKVDRSMFLKDFAEKYKNFSKEELHNMDLEK CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHCCCHHH LTLAGRLIGIRQTFGIIQDFSAKLQIYINKKNVAPEVFSTFKSLDIGDIIELEGVAMKTN HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEECCEEEECC SDEITLNVTNIRLVAKSLKVLPEKYHGLVDEEIKARQRYLDLIVNDETKNTFIKRSLIIR CCEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH EMRNWLDNKGFFEVETPVLQDILSGAAARPFITHHNTLNKEYYLRIATEIALKKCIIGGF HHHHHHCCCCCEEECCHHHHHHHCCCCCCCEEECCCCCCCHHEEHHHHHHHHHHHHHHHH EKVYEIGRIFRNEGMDSTHNPEFTSVELYIAYVDLYIMQLTEDLIRHIATKLNLLNPTFR HHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GFSIDLNKPFKKAHMVDLINEYVGVNFFEVKSDEQAIELAKKHHVKLLDHQKNFGHIVNA CEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHH FFETFVEEKLVEPTFVYGHPLQVSPLTKKNQSDPRFVDRFELFICQKEFANAYSEINDPI HHHHHHHHHHCCCEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH DQYERFIAQLEEAKLGNDEASELDMEFIEALEYGMPPTGGLGIGVDRLVMLLTSNDSIRN HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEECCCCCCE VLLFPHMKDKTK EEEECCCCCCCC >Mature Secondary Structure MERKFSDQELIRRTHLQELKNQNKNPFLITKVDRSMFLKDFAEKYKNFSKEELHNMDLEK CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHCCCHHH LTLAGRLIGIRQTFGIIQDFSAKLQIYINKKNVAPEVFSTFKSLDIGDIIELEGVAMKTN HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEECCEEEECC SDEITLNVTNIRLVAKSLKVLPEKYHGLVDEEIKARQRYLDLIVNDETKNTFIKRSLIIR CCEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH EMRNWLDNKGFFEVETPVLQDILSGAAARPFITHHNTLNKEYYLRIATEIALKKCIIGGF HHHHHHCCCCCEEECCHHHHHHHCCCCCCCEEECCCCCCCHHEEHHHHHHHHHHHHHHHH EKVYEIGRIFRNEGMDSTHNPEFTSVELYIAYVDLYIMQLTEDLIRHIATKLNLLNPTFR HHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GFSIDLNKPFKKAHMVDLINEYVGVNFFEVKSDEQAIELAKKHHVKLLDHQKNFGHIVNA CEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHH FFETFVEEKLVEPTFVYGHPLQVSPLTKKNQSDPRFVDRFELFICQKEFANAYSEINDPI HHHHHHHHHHCCCEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH DQYERFIAQLEEAKLGNDEASELDMEFIEALEYGMPPTGGLGIGVDRLVMLLTSNDSIRN HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEECCCCCCE VLLFPHMKDKTK EEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA