Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
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Accession | NC_010503 |
Length | 751,679 |
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The map label for this gene is smpB
Identifier: 170762068
GI number: 170762068
Start: 72636
End: 73061
Strand: Direct
Name: smpB
Synonym: UPA3_0057
Alternate gene names: 170762068
Gene position: 72636-73061 (Clockwise)
Preceding gene: 170762284
Following gene: 170762338
Centisome position: 9.66
GC content: 27.7
Gene sequence:
>426_bases ATGATTGTATCAAATAAACACGCACGTCGAAATTATGAATTACTAGATTTTTTTGAATGTGGAATCGTTTTAAAAGGAAC TGAAGTTAAATCTATTTCACGTGCTAATTGCTCAATTAATGAAGCTTATGTCCAAATAATTAAAAATCAAGCTTTAATTT TAAATATGCATGTTGCAAATTTTTTTGAGGGTAATAACTTTAATCAAGATCCATACCGGAATCGAAAACTATTATTACAC AAAAAAGAAATTATTAGACTTCAACATTTAGTGAAAACACAACATATGACAATTGTGCCAACCAAAATTTATTGGAAAAA TAATAAACTAAAGATAGAGATTGCTTTAGGAAAAGGTAAACAGCTTCATGATAAACGTGAGGATATAAAAAAAAGAGATT TAGCGCGTGAAACGCGTTTATTTTAA
Upstream 100 bases:
>100_bases CATTTTTATATAAAATATAACTTTTTTGCGATTAAAATTTCTTTTGAACTAATAAACTTTACAATTTATTAATAAAGAAA GGTTTTTAGTATTTTTAATA
Downstream 100 bases:
>100_bases TATTAAAGGAGGAATTATAATGAAAAGTGTTTGAAAGATTTTGTTAATAAAACATAAATTTTTATTTTTCTTTATTTTAT TTTTAAATTTAGTACAAGTT
Product: SsrA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 141; Mature: 141
Protein sequence:
>141_residues MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVANFFEGNNFNQDPYRNRKLLLH KKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGKQLHDKREDIKKRDLARETRLF
Sequences:
>Translated_141_residues MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVANFFEGNNFNQDPYRNRKLLLH KKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGKQLHDKREDIKKRDLARETRLF >Mature_141_residues MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVANFFEGNNFNQDPYRNRKLLLH KKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGKQLHDKREDIKKRDLARETRLF
Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes
COG id: COG0691
COG function: function code O; tmRNA-binding protein
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the smpB family
Homologues:
Organism=Escherichia coli, GI1788973, Length=133, Percent_Identity=36.8421052631579, Blast_Score=93, Evalue=6e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SSRP_UREP2 (B1AI43)
Other databases:
- EMBL: CP000942 - RefSeq: YP_001752137.1 - ProteinModelPortal: B1AI43 - SMR: B1AI43 - GeneID: 6155673 - GenomeReviews: CP000942_GR - KEGG: upa:UPA3_0057 - HOGENOM: HBG293422 - OMA: EKYEAGI - ProtClustDB: PRK05422 - BioCyc: UPAR505682:UPA3_0057-MONOMER - GO: GO:0005737 - GO: GO:0006412 - HAMAP: MF_00023 - InterPro: IPR000037 - InterPro: IPR020081 - Gene3D: G3DSA:2.40.280.10 - ProDom: PD004488 - TIGRFAMs: TIGR00086
Pfam domain/function: PF01668 SmpB; SSF74982 SmpB
EC number: NA
Molecular weight: Translated: 16700; Mature: 16700
Theoretical pI: Translated: 10.63; Mature: 10.63
Prosite motif: PS01317 SSRP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVAN CCCCCCCCCCCCCEEEHEECCEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEHE FFEGNNFNQDPYRNRKLLLHKKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGK EECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCEEEEEEEEEEECCEEEEEEEECCCC QLHDKREDIKKRDLARETRLF CCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVAN CCCCCCCCCCCCCEEEHEECCEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEHE FFEGNNFNQDPYRNRKLLLHKKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGK EECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCEEEEEEEEEEECCEEEEEEEECCCC QLHDKREDIKKRDLARETRLF CCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA