Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
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Accession | NC_010503 |
Length | 751,679 |
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The map label for this gene is 170762034
Identifier: 170762034
GI number: 170762034
Start: 79324
End: 79800
Strand: Reverse
Name: 170762034
Synonym: UPA3_0062
Alternate gene names: NA
Gene position: 79800-79324 (Counterclockwise)
Preceding gene: 170761863
Following gene: 170762438
Centisome position: 10.62
GC content: 26.0
Gene sequence:
>477_bases ATGAGTAAAAAAATCAAAATTTATTTAGCTGGTCCTTTATTCACCTTAGCTGAAATTAATGATCGAAAACAACAAGCTAG TTTAATTAGAAAAACATTTAAAGATGAATTACCAAATTATGAACTTGATCTTTTTAATCCGATCGAAGTTAACGACGAAT TAGGTGCTAATGCACATAAACCAAATATCTTTTTTTATGAATCAGATATTAAATTTATTGATCAAACTGATATCGCAATT ATAGATATTGATAACACTGATGATGGCACCATGGCTGAAATGGGTTATTTTGTAGCACTTCAAAAACACGTTAAACCAAC GTTAAAAATTTATATTTTAAATACTGATTGAAGAGTTCACAAACACCGCAATGAAGTTTTAAACAAGTTTTTAGATGGTA TGATATTATCACATTGCCAATATTTTACTAATTTTACAGATTTACTTAATCATTTATTAATAGAATTAAAAAAATAA
Upstream 100 bases:
>100_bases TTTTTTATTTTTAACTTTTGGATTCCAAAAATAAAAAAACTAATAAAAGCAAATTTAAATAATGTTATGATTAACACATT AAATTTTTAGGAGTAAATTC
Downstream 100 bases:
>100_bases TTCAAATCAATCAATTATATATATATAGGCACTAGTGGTTTTTAAACTCACACACCTACTTTTTTTTACTATCTGATTGT GATGAATTATAACATTGTAT
Product: nucleoside 2-deoxyribosyltransferase superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 158; Mature: 157
Protein sequence:
>158_residues MSKKIKIYLAGPLFTLAEINDRKQQASLIRKTFKDELPNYELDLFNPIEVNDELGANAHKPNIFFYESDIKFIDQTDIAI IDIDNTDDGTMAEMGYFVALQKHVKPTLKIYILNTDWRVHKHRNEVLNKFLDGMILSHCQYFTNFTDLLNHLLIELKK
Sequences:
>Translated_158_residues MSKKIKIYLAGPLFTLAEINDRKQQASLIRKTFKDELPNYELDLFNPIEVNDELGANAHKPNIFFYESDIKFIDQTDIAI IDIDNTDDGTMAEMGYFVALQKHVKPTLKIYILNTD*RVHKHRNEVLNKFLDGMILSHCQYFTNFTDLLNHLLIELKK >Mature_157_residues SKKIKIYLAGPLFTLAEINDRKQQASLIRKTFKDELPNYELDLFNPIEVNDELGANAHKPNIFFYESDIKFIDQTDIAII DIDNTDDGTMAEMGYFVALQKHVKPTLKIYILNTD*RVHKHRNEVLNKFLDGMILSHCQYFTNFTDLLNHLLIELKK
Specific function: Unknown
COG id: COG3613
COG function: function code F; Nucleoside 2-deoxyribosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007710 [H]
Pfam domain/function: PF05014 Nuc_deoxyrib_tr [H]
EC number: NA
Molecular weight: Translated: 18286; Mature: 18155
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKIKIYLAGPLFTLAEINDRKQQASLIRKTFKDELPNYELDLFNPIEVNDELGANAHK CCCEEEEEEECCEEEEHHCCCHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCC PNIFFYESDIKFIDQTDIAIIDIDNTDDGTMAEMGYFVALQKHVKPTLKIYILNTDRVHK CEEEEEECCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHH HRNEVLNKFLDGMILSHCQYFTNFTDLLNHLLIELKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SKKIKIYLAGPLFTLAEINDRKQQASLIRKTFKDELPNYELDLFNPIEVNDELGANAHK CCEEEEEEECCEEEEHHCCCHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCC PNIFFYESDIKFIDQTDIAIIDIDNTDDGTMAEMGYFVALQKHVKPTLKIYILNTDRVHK CEEEEEECCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHH HRNEVLNKFLDGMILSHCQYFTNFTDLLNHLLIELKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11048724 [H]