Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
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Accession | NC_010503 |
Length | 751,679 |
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The map label for this gene is pepF1
Identifier: 170761916
GI number: 170761916
Start: 80259
End: 82085
Strand: Reverse
Name: pepF1
Synonym: UPA3_0064
Alternate gene names: 170761916
Gene position: 82085-80259 (Counterclockwise)
Preceding gene: 170762420
Following gene: 170761863
Centisome position: 10.92
GC content: 26.44
Gene sequence:
>1827_bases ATGGAAAATAAAAAATACGAATGAGATCTTGATGATTTATTAAACAACAAATCATTAGATGATTTATATGCTGAATTTGA AGAAAAAAAAGCTAAATACATTAAAGCTTTTCCAACTTTTTTAGATTCAAAACAAAATTTTGCTCAATGACAAATTTTAG AAGAAGAATTCACAATTGTTGCAAATCGTTTTTATAATTATGTATCAAATAATTTAAATACTAATGTTGTTGATCCAAAA TGAAATTCTTGATCACAAAAACTATCAGCTTCTTTTTATGAATTAGAAACAGCATTAAGTAATTATAATAGTGTAGTTTT AGCAAACGAAGCAAAGATTAAAGAATATTTGACAGATTCTCAATTAAATGTATATACACGCAAGTATAATGAAATTTTTC GTTATCAACCACACACATTAAATAATGAACAAAGTAAGTTATTTTCAACATTAATACGTGCTGATGAAGGTTTTTCAACA ATTTTTTCAACATATACAAATAATGATATGAAATTTAGTGATGCTATTGATGCAAAAGGTAAAAAACACCCAATTAAGAA TGAAGCAGAAGCTTTTGTTCATTTAAAATCAAAAGATCGCGTTTTGCGTAAAAGCGCTTATTTATCAATGTATAGAGCAT ATTATGATTCACGTGAATCAATTACAAAAATGTTGTACTACAACTATTTATCATTAAATCAACAAGCAAAAGCAAAAAAC TTTGATGATTATATTGCTAAAGCAGCATTTGATGATGTTGTTGACAAATCATTAATTACTTTAATTTATGATCAAGTAAA ACTTTATAAAGATACAAATGAAGATTATAAAAAAGTACGAAATACATATTTAAAAAAATTAATTAAAGTTTCAAAGATCG AACCTTGAGATAATGGACTACCATTAATTTCTAAAAAAATTGACATTCCAATTGAAGAAGCAAAACAAATGGCTATTGAT TCATTATCAATTTTAGGTGATGAATATGTAAGTAATATTAAACGAGCATTCGATGAAAAATGAGTTTCATGATTACCACA AAAAGGGAAACGTGGTGGGGCTTATTCAATTGGTGGCACAAAGGGTATTAGTAAATATTATATTTTAATGAACTATACTA ACTCATTACGTGATGTACAAACTATTGTTCATGAATTAGGCCACTCAATGCATTCGTTATATTCTAATCGCACACAAAAA ATTTATAGTGATTACAAGATTTTCTATGCGGAAATTGCATCAATTTCAAATGAAGTTTATTTAAACTACTATTTATTAGA AAAATACAAGAACGATCTTGAAATGAAATTAATGATTTTAGATGAAATGATTAGTGGGTTCTTCGCAACAACAACAAGAC AAGTAATTTTTTCAAATTTTGAATGAATTGCTAATGAATTAATTAATAGTGGGGCACCATTTACGGCAGATGTTGTTATG AAAGAATATCAAAAACTAGAACTTGAATATACTAACAAACCAATTGTAGAGGATCTAAATTCAATTTATTCATTATCAAG CATTACTCCACTTCGTATTCCTCATTTTTATGTAGGTAATTTTTATGTATATAAATATGCAGTAGGTCAAGTTGCAGCAA TTATTTCAGGCCATCGTGTTTTCACTAAAGTAACAGGTGCAAAACAAAAAGTGTTTGATTTCTTATCAAGTGGTGGTTCA AAAGATCCATTAGATACAATTAAATTACTAGGTGTTGATTTAACAAAACCACAAGCATGACAAGAAGCCTTAGAAATTGT TAAATTATGAATTAAAGATTATAAACAAACAATTGCTTTACTAAATAAAAAAAGAAGCAAAAAATAA
Upstream 100 bases:
>100_bases TAGAACTCAACATGATTTTTTTCCTATTTTTTAGCAATTAACTTTATATATTGCTATTAATAAATATTATAATTATTATA TTCGTTATAAGGAGTTTGTA
Downstream 100 bases:
>100_bases TATTTAAATTTCAAAAGGTTTAATATGAGTGACGAACAAAAAACTAAATTAATAGAATTGAAGCAAAAAGTTAATGATCT TGAGTTTGAATTAGATAAAA
Product: oligoendopeptidase F
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 608; Mature: 608
Protein sequence:
>608_residues MENKKYEWDLDDLLNNKSLDDLYAEFEEKKAKYIKAFPTFLDSKQNFAQWQILEEEFTIVANRFYNYVSNNLNTNVVDPK WNSWSQKLSASFYELETALSNYNSVVLANEAKIKEYLTDSQLNVYTRKYNEIFRYQPHTLNNEQSKLFSTLIRADEGFST IFSTYTNNDMKFSDAIDAKGKKHPIKNEAEAFVHLKSKDRVLRKSAYLSMYRAYYDSRESITKMLYYNYLSLNQQAKAKN FDDYIAKAAFDDVVDKSLITLIYDQVKLYKDTNEDYKKVRNTYLKKLIKVSKIEPWDNGLPLISKKIDIPIEEAKQMAID SLSILGDEYVSNIKRAFDEKWVSWLPQKGKRGGAYSIGGTKGISKYYILMNYTNSLRDVQTIVHELGHSMHSLYSNRTQK IYSDYKIFYAEIASISNEVYLNYYLLEKYKNDLEMKLMILDEMISGFFATTTRQVIFSNFEWIANELINSGAPFTADVVM KEYQKLELEYTNKPIVEDLNSIYSLSSITPLRIPHFYVGNFYVYKYAVGQVAAIISGHRVFTKVTGAKQKVFDFLSSGGS KDPLDTIKLLGVDLTKPQAWQEALEIVKLWIKDYKQTIALLNKKRSKK
Sequences:
>Translated_608_residues MENKKYE*DLDDLLNNKSLDDLYAEFEEKKAKYIKAFPTFLDSKQNFAQ*QILEEEFTIVANRFYNYVSNNLNTNVVDPK *NS*SQKLSASFYELETALSNYNSVVLANEAKIKEYLTDSQLNVYTRKYNEIFRYQPHTLNNEQSKLFSTLIRADEGFST IFSTYTNNDMKFSDAIDAKGKKHPIKNEAEAFVHLKSKDRVLRKSAYLSMYRAYYDSRESITKMLYYNYLSLNQQAKAKN FDDYIAKAAFDDVVDKSLITLIYDQVKLYKDTNEDYKKVRNTYLKKLIKVSKIEP*DNGLPLISKKIDIPIEEAKQMAID SLSILGDEYVSNIKRAFDEK*VS*LPQKGKRGGAYSIGGTKGISKYYILMNYTNSLRDVQTIVHELGHSMHSLYSNRTQK IYSDYKIFYAEIASISNEVYLNYYLLEKYKNDLEMKLMILDEMISGFFATTTRQVIFSNFE*IANELINSGAPFTADVVM KEYQKLELEYTNKPIVEDLNSIYSLSSITPLRIPHFYVGNFYVYKYAVGQVAAIISGHRVFTKVTGAKQKVFDFLSSGGS KDPLDTIKLLGVDLTKPQA*QEALEIVKL*IKDYKQTIALLNKKRSKK >Mature_608_residues MENKKYE*DLDDLLNNKSLDDLYAEFEEKKAKYIKAFPTFLDSKQNFAQ*QILEEEFTIVANRFYNYVSNNLNTNVVDPK *NS*SQKLSASFYELETALSNYNSVVLANEAKIKEYLTDSQLNVYTRKYNEIFRYQPHTLNNEQSKLFSTLIRADEGFST IFSTYTNNDMKFSDAIDAKGKKHPIKNEAEAFVHLKSKDRVLRKSAYLSMYRAYYDSRESITKMLYYNYLSLNQQAKAKN FDDYIAKAAFDDVVDKSLITLIYDQVKLYKDTNEDYKKVRNTYLKKLIKVSKIEP*DNGLPLISKKIDIPIEEAKQMAID SLSILGDEYVSNIKRAFDEK*VS*LPQKGKRGGAYSIGGTKGISKYYILMNYTNSLRDVQTIVHELGHSMHSLYSNRTQK IYSDYKIFYAEIASISNEVYLNYYLLEKYKNDLEMKLMILDEMISGFFATTTRQVIFSNFE*IANELINSGAPFTADVVM KEYQKLELEYTNKPIVEDLNSIYSLSSITPLRIPHFYVGNFYVYKYAVGQVAAIISGHRVFTKVTGAKQKVFDFLSSGGS KDPLDTIKLLGVDLTKPQA*QEALEIVKL*IKDYKQTIALLNKKRSKK
Specific function: Unknown
COG id: COG1164
COG function: function code E; Oligoendopeptidase F
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3B family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 - InterPro: IPR004438 - InterPro: IPR013647 [H]
Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]
EC number: NA
Molecular weight: Translated: 68788; Mature: 68788
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENKKYEDLDDLLNNKSLDDLYAEFEEKKAKYIKAFPTFLDSKQNFAQQILEEEFTIVAN CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH RFYNYVSNNLNTNVVDPKNSSQKLSASFYELETALSNYNSVVLANEAKIKEYLTDSQLNV HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCHHH YTRKYNEIFRYQPHTLNNEQSKLFSTLIRADEGFSTIFSTYTNNDMKFSDAIDAKGKKHP HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECHHHCCCCCCCC IKNEAEAFVHLKSKDRVLRKSAYLSMYRAYYDSRESITKMLYYNYLSLNQQAKAKNFDDY CCCCHHHHEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHCCCHHHH IAKAAFDDVVDKSLITLIYDQVKLYKDTNEDYKKVRNTYLKKLIKVSKIEPDNGLPLISK HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC KIDIPIEEAKQMAIDSLSILGDEYVSNIKRAFDEKVSLPQKGKRGGAYSIGGTKGISKYY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEE ILMNYTNSLRDVQTIVHELGHSMHSLYSNRTQKIYSDYKIFYAEIASISNEVYLNYYLLE EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH KYKNDLEMKLMILDEMISGFFATTTRQVIFSNFEIANELINSGAPFTADVVMKEYQKLEL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH EYTNKPIVEDLNSIYSLSSITPLRIPHFYVGNFYVYKYAVGQVAAIISGHRVFTKVTGAK HCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEHHHHHHHHHHHCCCHHEEHHCCHH QKVFDFLSSGGSKDPLDTIKLLGVDLTKPQAQEALEIVKLIKDYKQTIALLNKKRSKK HHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MENKKYEDLDDLLNNKSLDDLYAEFEEKKAKYIKAFPTFLDSKQNFAQQILEEEFTIVAN CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH RFYNYVSNNLNTNVVDPKNSSQKLSASFYELETALSNYNSVVLANEAKIKEYLTDSQLNV HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCHHH YTRKYNEIFRYQPHTLNNEQSKLFSTLIRADEGFSTIFSTYTNNDMKFSDAIDAKGKKHP HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECHHHCCCCCCCC IKNEAEAFVHLKSKDRVLRKSAYLSMYRAYYDSRESITKMLYYNYLSLNQQAKAKNFDDY CCCCHHHHEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHCCCHHHH IAKAAFDDVVDKSLITLIYDQVKLYKDTNEDYKKVRNTYLKKLIKVSKIEPDNGLPLISK HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC KIDIPIEEAKQMAIDSLSILGDEYVSNIKRAFDEKVSLPQKGKRGGAYSIGGTKGISKYY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEE ILMNYTNSLRDVQTIVHELGHSMHSLYSNRTQKIYSDYKIFYAEIASISNEVYLNYYLLE EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH KYKNDLEMKLMILDEMISGFFATTTRQVIFSNFEIANELINSGAPFTADVVMKEYQKLEL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH EYTNKPIVEDLNSIYSLSSITPLRIPHFYVGNFYVYKYAVGQVAAIISGHRVFTKVTGAK HCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEHHHHHHHHHHHCCCHHEEHHCCHH QKVFDFLSSGGSKDPLDTIKLLGVDLTKPQAQEALEIVKLIKDYKQTIALLNKKRSKK HHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7569993; 8253680 [H]