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The map label for this gene is ychO [H]

Identifier: 170683203

GI number: 170683203

Start: 1942450

End: 1943844

Strand: Reverse

Name: ychO [H]

Synonym: EcSMS35_1920

Alternate gene names: 170683203

Gene position: 1943844-1942450 (Counterclockwise)

Preceding gene: 170682112

Following gene: 170681694

Centisome position: 38.35

GC content: 51.04

Gene sequence:

>1395_bases
TTGAGCCGTTTCGTTCCTCGCATTATTCCGTTTTATTTACTCTTGCTGGCGGCAGGCGGTACAGCTAACGCACAATCTAC
CTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATGGTCTGCCGGATTTAGGCATGGCACCTGAAAATCATG
ATGGGGAAAAACACTTTGCGGAAATTGTGAAAGATTTCGGCGAAACCAGTATGAATGATAACGGGCTGGATACTGGCGAG
CAGGCAAAAGCTTTCGCATTAGGAAAAGTCCGCGACGCGCTTAGTCAACAGGTTAATCAGCACGTAGAGTCCTGGCTATC
ACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGC
CGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATGATGGCTTGGTGAGCAATGTG
GGCGTAGGGCAACGCTGGGCGCGCGGCAACTGGCTGGTGGGTTATAACACTTTTTATGACAACTTGCTGGACGAAAATCT
TCAGCGAGCGGGCTTTGGTGCCGAAGCGTGGGGCGAATATTTGCGACTATCGGCAAACTTTTATCAGCCGTTTGCTGCAT
GGCATGAACAGACAGCCACGCAGGAACAGCGGATGGCGCGCGGGTACGACCTGACAGCCCGGATGCGCATGCCGTTCTAT
CAACACCTCAATACCAGTGTCAGCGTAGAACAGTATTTTGGTGATCGTGTCGATTTGTTTAACTCTGGTACGGGTTATCA
CAATCCCGTCGCGTTGAGTCTGGGATTAAATTACACCCCTGTGCCCTTAGTCACTGTGACGGCCCGGCATAAACAGGGTG
AAAGTGGCGAGAATCAAAATAACCTCGGGCTGAATCTTAACTACCGCTTTGGTGTACCGCTCAAAAAACAACTTTCTGCG
GGCGAAGTTGCCGAAAGTCAGTCGTTACGTGGTAGTCGCTATGACAATCCGCAGCGAAATAATCTTCCGACTCTTGAGTA
CCGACAGCGAAAAACCTTAACGGTGTTTCTGGCGACACCGCCGTGGGATCTAAAACCTGGCGAAACAGTGCCGCTGAAAT
TACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGACGCCGGGCGCA
CAAGCCAACAGTGAGGAGGGCTGGACGCTGATCATGCCTGACTGGCAAAACGGGGAAGGCGCAAGCAATCACTGGCGATT
GTCAGTAGTGGTGGAAGATAACCAGGGGCAGCGTGTCTCCTCCAATGAGATCACGCTAACGCTTGTCGAACCGTTCGACG
CATTGTCAAACGACGAACTGCGCTGGGAACCGTAA

Upstream 100 bases:

>100_bases
AGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGGTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTTT
TACCGGAAGTTACCGACGTT

Downstream 100 bases:

>100_bases
TCAGAAAATGCGCTCCTGATGCACCCATACCGCAGCTTCCACGCGAGACTTGAGCTTCATTTTCTTCAGCATGTGCTTGA
CGTGCACTTTTACTGTGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MSRFVPRIIPFYLLLLAAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGE
QAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDDGLVSNV
GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFY
QHLNTSVSVEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTARHKQGESGENQNNLGLNLNYRFGVPLKKQLSA
GEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGA
QANSEEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP

Sequences:

>Translated_464_residues
MSRFVPRIIPFYLLLLAAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGE
QAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDDGLVSNV
GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFY
QHLNTSVSVEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTARHKQGESGENQNNLGLNLNYRFGVPLKKQLSA
GEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGA
QANSEEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
>Mature_463_residues
SRFVPRIIPFYLLLLAAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQ
AKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDDGLVSNVG
VGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQ
HLNTSVSVEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTARHKQGESGENQNNLGLNLNYRFGVPLKKQLSAG
EVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQ
ANSEEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intimin/invasin family [H]

Homologues:

Organism=Escherichia coli, GI145693120, Length=464, Percent_Identity=98.9224137931034, Blast_Score=942, Evalue=0.0,
Organism=Escherichia coli, GI145693153, Length=361, Percent_Identity=32.409972299169, Blast_Score=171, Evalue=6e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52145; Mature: 52014

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFVPRIIPFYLLLLAAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFA
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
EIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDN
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
EGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDDGLVSNVGVGQRWARGNWLVGYNTFYD
CCCEECCCCCEEEEECCCCCEEEHHHCCCCCCCCCCEECCCCCCEECCCCEEEEEHHHHH
NLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFY
HHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
QHLNTSVSVEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTARHKQGESGENQN
HHCCCCEEHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCC
NLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATP
CCEEEEEEEECCCHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCEECCCEEEEEEEECC
PWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSEEGWTLIMPDWQNGEG
CCCCCCCCEEEEEEEECCCCCHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCC
ASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
CCCEEEEEEEEECCCCCEECCCCEEEEEECCCCCCCCCCEEECC
>Mature Secondary Structure 
SRFVPRIIPFYLLLLAAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFA
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
EIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDN
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
EGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDDGLVSNVGVGQRWARGNWLVGYNTFYD
CCCEECCCCCEEEEECCCCCEEEHHHCCCCCCCCCCEECCCCCCEECCCCEEEEEHHHHH
NLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFY
HHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
QHLNTSVSVEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTARHKQGESGENQN
HHCCCCEEHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCC
NLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATP
CCEEEEEEEECCCHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCEECCCEEEEEEEECC
PWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSEEGWTLIMPDWQNGEG
CCCCCCCCEEEEEEEECCCCCHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCC
ASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
CCCEEEEEEEEECCCCCEECCCCEEEEEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2657652; 2649492; 7567469 [H]