Click here to switch to the map view.

The map label for this gene is ydcV [H]

Identifier: 170682582

GI number: 170682582

Start: 1735680

End: 1736474

Strand: Reverse

Name: ydcV [H]

Synonym: EcSMS35_1731

Alternate gene names: 170682582

Gene position: 1736474-1735680 (Counterclockwise)

Preceding gene: 170683660

Following gene: 170681515

Centisome position: 34.26

GC content: 53.58

Gene sequence:

>795_bases
ATGCACTCTGAACGCGCACCGTTTTTCCTTAAACTGGCGGCCTGGGGCGGCGTGGTTTTCCTACATTTTCCCATCCTGAT
TATCGCCGCTTATGCGTTTAACACTGAAGATGCGGCGTTTAGTTTTCCACCGCAAGGCCTGACGTTGCGCTGGTTTAGCG
TGGCAGCACAGCGTAGTGACATTCTTGATGCCGTGACACTGTCACTTAAGGTGGCGACGCTGGCGACATTAATCGCGCTG
GTGTTAGGGACGCTGGCTGCTGCCGCACTATGGCGACGAGACTTTTTCGGTAAAAACGCCATTTCGTTGTTACTGCTGCT
GCCCATTGCGCTGCCGGGCATTGTCACTGGTCTGGCGCTATTAACCGCTTTTAAAACCATCAATCTGGATCCGGGATTTT
TCACCATCGTGGTCGGTCATGCGACTTTTTGCGTAGTGGTGGTGTTTAACAATGTCATCGCCCGTTTTCGCCGCACCTCG
TGGAGTCTGGTTGAGGCGTCAATGGATCTTGGGGCTAATGGGTGGCAAACCTTCCGCTACGTAGTGTTGCCGAATCTCAG
TTCGGCGCTACTGGCAGGAGGAATGCTGGCATTTGCCTTGTCGTTCGATGAAATCATCGTGACGACCTTTACGGCAGGTC
ATGAACGAACGTTACCGTTGTGGTTGCTCAATCAGCTTGGGCGACCGCGTGATGTACCGGTAACCAACGTGGTGGCACTG
CTGGTTATGTTGGTAACAACCTTGCCGATCCTGGGGGCCTGGTGGCTAACCCGCGAAGGCGACAATGGTCAATAA

Upstream 100 bases:

>100_bases
GGGGCGATTGGCAATATGCCGATGGCGGCGGCATTCACCCTGGTGCCGATTGTTCTCATCGCACTGTACCTGGCGTTCGT
GAAACGTCTGGGAGCGTTCG

Downstream 100 bases:

>100_bases
CCACTGATACAGGAATATGCTATGCAACATAAGTTACTGATTAACGGAGAACTGGTTAGCGGCGAAGGGGAAAAACAGCC
TGTCTATAATCCGGCAACGG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVATLATLIAL
VLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLDPGFFTIVVGHATFCVVVVFNNVIARFRRTS
WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTLPILGAWWLTREGDNGQ

Sequences:

>Translated_264_residues
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVATLATLIAL
VLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLDPGFFTIVVGHATFCVVVVFNNVIARFRRTS
WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTLPILGAWWLTREGDNGQ
>Mature_264_residues
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVATLATLIAL
VLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLDPGFFTIVVGHATFCVVVVFNNVIARFRRTS
WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTLPILGAWWLTREGDNGQ

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=264, Percent_Identity=99.2424242424242, Blast_Score=516, Evalue=1e-148,
Organism=Escherichia coli, GI1787368, Length=234, Percent_Identity=29.0598290598291, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787081, Length=256, Percent_Identity=31.25, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787080, Length=214, Percent_Identity=28.0373831775701, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788764, Length=167, Percent_Identity=32.3353293413174, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28738; Mature: 28738

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSD
CCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEHHHHHHHHHHH
ILDAVTLSLKVATLATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LTAFKTINLDPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRY
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHEEEE
VVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
EEECCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHH
LVMLVTTLPILGAWWLTREGDNGQ
HHHHHHHHHHHHHHHEECCCCCCC
>Mature Secondary Structure
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSD
CCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEHHHHHHHHHHH
ILDAVTLSLKVATLATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LTAFKTINLDPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRY
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHEEEE
VVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
EEECCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHH
LVMLVTTLPILGAWWLTREGDNGQ
HHHHHHHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]