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The map label for this gene is ydcS [H]

Identifier: 170681458

GI number: 170681458

Start: 1738437

End: 1739582

Strand: Reverse

Name: ydcS [H]

Synonym: EcSMS35_1734

Alternate gene names: 170681458

Gene position: 1739582-1738437 (Counterclockwise)

Preceding gene: 170682466

Following gene: 170680113

Centisome position: 34.32

GC content: 52.71

Gene sequence:

>1146_bases
ATGAGCAAGATTTTTGCCCGCAGCAGCCTGTGTGCGCTCACCATGACAATAATGACCGCTCACGCCGCCGAACCGCCTAC
CAATTTAGATAAACCGGAAGGGCGACTGGATATTATCGCCTGGCCGGGATACATCGAACGCGGACAAACTGATAATCAAT
ACGACTGGGTAACGCAATTCGAAAAAGAGACAGGCTGCGCGGTGAATGTGAAAACCGCCGCGACTTCCGATGAAATGGTC
AGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGCCTGATTATGGGCAAACGCGT
GCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAGCGCTCGATCCGCGCGTGGTTAAAGGCGACTGGTTTAACGTTG
GCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCG
AATAGCTGGCAAGTGGTTTTTGTTGAGCAGAATCTGCCGGACGGCAAGAGCAATAAAGGCCGCGTTCAGGCTTATGATGG
CCCTATCTACATTGCGGACGCTGCGTTGTTCGTTAAAGCCACTCAGCCGCAGTTGGGCATCAGCGATCCGTATCAACTCA
CCGAAGAACAGTACCAGGCGGTGCTGAAAGTGCTGCGCGATCAACATAGTTTGATCCATCGCTACTGGCATGACACTACC
GTGCAAATGAGCGATTTCAAAAACGAGGGTGTAGTTGCTTCCAGTGCATGGCCCTATCAGGCCAACGCCCTGAAAGCCGA
AGGCCAGCCTGTCGCTACCGTTTTCCCGAAAGAGGGCGTTACCGGTTGGGCTGACACCACCATGCTACATAGCGAAGCGA
AACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACCCCAAAAGTGCAGGGCGATGTGGCGGCCTGGTTTGGC
TCGCTACCAGTAGTGCCGCAAGGGTGTAAAGCCAGTCCGTTATTAGGCGAGAAAGGTTGTGAAACAAACGGTTTTAACTA
TTTCGATAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATT
ACATTGCCATTATGGGTGGTCGCTAA

Upstream 100 bases:

>100_bases
GGGGCGAAGGTGTGCCTGCTAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAAT
TACGACAGGAGTAAGACCTT

Downstream 100 bases:

>100_bases
CTTCGCTGGGGTGTTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCACGGTTGTACGGTGACGTGCGCGCAGTAGAT
GGCGTCAGTATTGCGATAAA

Product: ABC transporter periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSKIFARSSLCALTMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDNQYDWVTQFEKETGCAVNVKTAATSDEMV
SLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKALDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPP
NSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
SLPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR

Sequences:

>Translated_381_residues
MSKIFARSSLCALTMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDNQYDWVTQFEKETGCAVNVKTAATSDEMV
SLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKALDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPP
NSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
SLPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR
>Mature_380_residues
SKIFARSSLCALTMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDNQYDWVTQFEKETGCAVNVKTAATSDEMVS
LMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKALDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPN
SWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTTV
QMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGS
LPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=381, Percent_Identity=98.1627296587926, Blast_Score=781, Evalue=0.0,
Organism=Escherichia coli, GI1787078, Length=295, Percent_Identity=25.7627118644068, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42319; Mature: 42188

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIFARSSLCALTMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDNQYDWVTQF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHCCCCCCCCCHHHHHH
EKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKA
HHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCEECCCCCC
LDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPNSWQVVFVEQNLPDGKSNKG
CCCEEEECCEEECCCEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCC
RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
EEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY
EEECCCCCCCEEEECCCCCCCCEEECCCCEEEEECCCCCCCCCCHHHEEHHCCCCCEEEE
KWMNWSLTPKVQGDVAAWFGSLPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAE
EECCEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEECCCHHC
GGKFVPYSRWTQDYIAIMGGR
CCCCCCCHHCCCCEEEEECCC
>Mature Secondary Structure 
SKIFARSSLCALTMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDNQYDWVTQF
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHCCCCCCCCCHHHHHH
EKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKA
HHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCEECCCCCC
LDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPNSWQVVFVEQNLPDGKSNKG
CCCEEEECCEEECCCEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCC
RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
EEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY
EEECCCCCCCEEEECCCCCCCCEEECCCCEEEEECCCCCCCCCCHHHEEHHCCCCCEEEE
KWMNWSLTPKVQGDVAAWFGSLPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAE
EECCEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEECCCHHC
GGKFVPYSRWTQDYIAIMGGR
CCCCCCCHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]