Click here to switch to the map view.

The map label for this gene is ynfB

Identifier: 170680551

GI number: 170680551

Start: 1607679

End: 1608020

Strand: Reverse

Name: ynfB

Synonym: EcSMS35_1617

Alternate gene names: 170680551

Gene position: 1608020-1607679 (Counterclockwise)

Preceding gene: 170679938

Following gene: 170682991

Centisome position: 31.73

GC content: 50.58

Gene sequence:

>342_bases
ATGAAAATCACTCTCAGCAAACGAATCGGCCTGCTCGCTTTTCTGCTGCCTTGCGCACTGGCATTGAGCACAACTGTTCA
TGCCGAAACTAACAAACTGGTGATTGAGTCTGGCGACAGTGCACAAAGCCGCCAGCACGCCGCTATGGAAAAAGAGCAAT
GGAATGACACGCGCAATCTGCGCCAGAAAGTGAATAAACGCACTGAAAAAGAGTGGGATAAAGCCGACGCCGCTTTTGAT
AACCGCGATAAATGTGAGCAAAGCGCCAACATCAATGCCTACTGGGAGCCAAATACTTTGCGCTGCCTGGACCGTCGAAC
TGGTCGCGTTATTACCCCCTAA

Upstream 100 bases:

>100_bases
GACGACATAATATCAGCAATATAAACACCCTCCTTGAACGTTTTGCGTTCGCAGTGGATGGTGTAGAATCAGCTTTAATC
ATTCATACAGGGAATGAATT

Downstream 100 bases:

>100_bases
CCTGTTATTGATTTAAGGAATGTAAGGACACGTTATGCCAAGCGCCCACAGTGTTAAGCTACGCCCGCTGGAGCGTGAAG
ATTTACGCTATGTACATCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MKITLSKRIGLLAFLLPCALALSTTVHAETNKLVIESGDSAQSRQHAAMEKEQWNDTRNLRQKVNKRTEKEWDKADAAFD
NRDKCEQSANINAYWEPNTLRCLDRRTGRVITP

Sequences:

>Translated_113_residues
MKITLSKRIGLLAFLLPCALALSTTVHAETNKLVIESGDSAQSRQHAAMEKEQWNDTRNLRQKVNKRTEKEWDKADAAFD
NRDKCEQSANINAYWEPNTLRCLDRRTGRVITP
>Mature_113_residues
MKITLSKRIGLLAFLLPCALALSTTVHAETNKLVIESGDSAQSRQHAAMEKEQWNDTRNLRQKVNKRTEKEWDKADAAFD
NRDKCEQSANINAYWEPNTLRCLDRRTGRVITP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0482 family

Homologues:

Organism=Escherichia coli, GI1787866, Length=113, Percent_Identity=99.1150442477876, Blast_Score=233, Evalue=3e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNFB_ECO24 (A7ZM42)

Other databases:

- EMBL:   CP000800
- RefSeq:   YP_001462871.1
- STRING:   A7ZM42
- EnsemblBacteria:   EBESCT00000021061
- GeneID:   5590144
- GenomeReviews:   CP000800_GR
- KEGG:   ecw:EcE24377A_1790
- eggNOG:   NOG12249
- GeneTree:   EBGT00050000010493
- HOGENOM:   HBG636731
- OMA:   ANVNAYW
- ProtClustDB:   PRK13659
- BioCyc:   ECOL331111:ECE24377A_1790-MONOMER
- HAMAP:   MF_01581
- InterPro:   IPR009700
- ProDom:   PD073251

Pfam domain/function: PF06932 DUF1283

EC number: NA

Molecular weight: Translated: 12943; Mature: 12943

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITLSKRIGLLAFLLPCALALSTTVHAETNKLVIESGDSAQSRQHAAMEKEQWNDTRNL
CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHH
RQKVNKRTEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP
HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKITLSKRIGLLAFLLPCALALSTTVHAETNKLVIESGDSAQSRQHAAMEKEQWNDTRNL
CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHH
RQKVNKRTEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP
HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA