Click here to switch to the map view.

The map label for this gene is ldrD [H]

Identifier: 170680436

GI number: 170680436

Start: 3926452

End: 3926619

Strand: Reverse

Name: ldrD [H]

Synonym: EcSMS35_3856

Alternate gene names: 170680436

Gene position: 3926619-3926452 (Counterclockwise)

Preceding gene: 170680787

Following gene: 170679996

Centisome position: 77.47

GC content: 50.6

Gene sequence:

>168_bases
TTGAACCTAGACCACTCAAGAATAGCCGCGAAACGTTGTCATTACAACACAGGCGGCTATATGACGCTCGCAGAACTGGG
CATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGCATGATCGTGAACTGGCTGAATAAGC
GGAAGTAA

Upstream 100 bases:

>100_bases
CAATGTTGCGGGGGCTTAATCCCTGGTGGCATTGGTTGCTGGAGAGAGAAAACCCCCGCATATTGCAGGTATGCACCTGA
CAACATCACGGGGGCTAATC

Downstream 100 bases:

>100_bases
CGTGTCAGACGGGCGTCAGGCTGCCGTAATGGCAATTTGCGCCCGGACCAGGCCGCAGGGATAAAACTCTGCGGCCTTTT
TCGTAAGAAAAATGCAACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 55; Mature: 55

Protein sequence:

>55_residues
MNLDHSRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK

Sequences:

>Translated_55_residues
MNLDHSRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
>Mature_55_residues
MNLDHSRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK

Specific function: Toxic peptide whose overexpression causes rapid cell killing and nucleoid condensation of the host cell. Overexpression induces stress-response and a number of membrane protein genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the toxic peptide ldr family [H]

Homologues:

Organism=Escherichia coli, GI48994945, Length=35, Percent_Identity=97.1428571428571, Blast_Score=72, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 6172; Mature: 6172

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
9.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
9.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLDHSRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLDHSRIAAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]