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The map label for this gene is ydbJ

Identifier: 170680086

GI number: 170680086

Start: 1788206

End: 1788331

Strand: Reverse

Name: ydbJ

Synonym: EcSMS35_1772

Alternate gene names: 170680086

Gene position: 1788331-1788206 (Counterclockwise)

Preceding gene: 170681328

Following gene: 170681090

Centisome position: 35.28

GC content: 55.56

Gene sequence:

>126_bases
ATGATCGGCGGTTCGCTTTCTGTTGCCCGTCAACTGGATGGTACGGCGATTGGGATGTGTGCATTACCCAACGGCAAACG
CTGTAGCGAACAGTCACTTGCCGCCGGGAGCTGTGGCAGCTATTAA

Upstream 100 bases:

>100_bases
GTCGGCGTGTAGTAGTGAACCTGTTCAGCAGGCGACTGCGGCGCACGTAGCGCCAGGTTTAAAAGCGTCGATGTCCAGTA
GTGGAGAAGCAAATTGTGCA

Downstream 100 bases:

>100_bases
TTCATTAAATCCGCCAGCTTATAAGTTAATGTCTGTTTCGCGGTCGCCAGCGTTAACTGGTTCGCGGTCAGATCCACTTG
TGCACCTTCTTTCAGCATTT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 41; Mature: 41

Protein sequence:

>41_residues
MIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY

Sequences:

>Translated_41_residues
MIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY
>Mature_41_residues
MIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY

Specific function: Unknown

COG id: COG3042

COG function: function code R; Putative hemolysin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081894, Length=41, Percent_Identity=100, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDBJ_ECOL6 (P0ACW3)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_753727.1
- ProteinModelPortal:   P0ACW3
- EnsemblBacteria:   EBESCT00000044932
- GeneID:   1035628
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c1825
- GeneTree:   EBGT00050000011237
- HOGENOM:   HBG756869
- OMA:   SAIGMCA
- ProtClustDB:   CLSK894102
- InterPro:   IPR005590

Pfam domain/function: PF03891 DUF333

EC number: NA

Molecular weight: Translated: 4062; Mature: 4062

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
12.2 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
12.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY
CCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY
CCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157