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The map label for this gene is yibN

Identifier: 170679980

GI number: 170679980

Start: 4025801

End: 4026232

Strand: Reverse

Name: yibN

Synonym: EcSMS35_3948

Alternate gene names: 170679980

Gene position: 4026232-4025801 (Counterclockwise)

Preceding gene: 170679583

Following gene: 170682334

Centisome position: 79.44

GC content: 50.0

Gene sequence:

>432_bases
ATGCAAGAAATTATGCAATTTGTTGGCCGTCATCCCATACTGAGTATCGCCTGGATCGCGTTACTGGTGGCGGTTCTTGT
GACTACGTTTAAGAGCCTGACCTCGAAAGTGAAGGTGATTACTCGTGGTGAAGCTACGCGTCTGATCAACAAAGAAGACG
CTGTGGTTGTGGATTTACGTCAGCGTGATGACTTCCGTAAAGGCCATATCGCAGGTTCTATCAACCTGTTGCCGAGCGAA
ATCAAAGCCAACAATGTTGGTGAGCTTGAGAAGCACAAAGACAAACCGGTTATCGTGGTAGATGGTTCTGGCATGCAGTG
CCAGGAGCCTGCAAACGCGCTGACGAAAGCTGGTTTTGCGCAAGTATTCGTGCTGAAAGAGGGCGTTGCTGGCTGGGCTG
GCGAAAACTTACCTCTGGTGCGCGGCAAATAA

Upstream 100 bases:

>100_bases
AATTGCATTCCAGTTAACGCGCTGGCTGTATTTGCCGCACTGCGCAGGTATACTCCTTTCCTGGTTTTTTTAATCACTAC
GTCGGGAGTTGTTACCCCCC

Downstream 100 bases:

>100_bases
TTTACCTGTCGTCTTTCATGATGCAGGCCGTTAGCTGCAATTAGGCCCCCAGCGACTTATTGTTATAAGCTTCTGGGGAC
ACTCCATTTTGCAGCCGCCC

Product: rhodanese domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGEATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSE
IKANNVGELEKHKDKPVIVVDGSGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK

Sequences:

>Translated_143_residues
MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGEATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSE
IKANNVGELEKHKDKPVIVVDGSGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK
>Mature_143_residues
MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGEATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSE
IKANNVGELEKHKDKPVIVVDGSGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK

Specific function: Unknown

COG id: COG0607

COG function: function code P; Rhodanese-related sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain

Homologues:

Organism=Escherichia coli, GI1790040, Length=143, Percent_Identity=100, Blast_Score=290, Evalue=2e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIBN_ECO57 (P0AG29)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A98190
- PIR:   B86037
- RefSeq:   NP_290194.1
- RefSeq:   NP_312516.1
- ProteinModelPortal:   P0AG29
- SMR:   P0AG29
- EnsemblBacteria:   EBESCT00000025441
- EnsemblBacteria:   EBESCT00000056473
- GeneID:   915568
- GeneID:   960936
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z5038
- KEGG:   ecs:ECs4489
- GeneTree:   EBGT00050000011337
- HOGENOM:   HBG743107
- OMA:   RSNDEFR
- ProtClustDB:   CLSK880739
- BioCyc:   ECOL83334:ECS4489-MONOMER
- InterPro:   IPR001763
- Gene3D:   G3DSA:3.40.250.10
- SMART:   SM00450

Pfam domain/function: PF00581 Rhodanese; SSF52821 Rhodanese-like

EC number: NA

Molecular weight: Translated: 15596; Mature: 15596

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGEATRLINKEDAVVVDLR
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHCCCCCEEEEEEC
QRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDGSGMQCQEPANALTKAGFA
CCCCCCCCCCCEECCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCHHHHHHHCCHH
QVFVLKEGVAGWAGENLPLVRGK
HEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGEATRLINKEDAVVVDLR
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHCCCCCEEEEEEC
QRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDGSGMQCQEPANALTKAGFA
CCCCCCCCCCCEECCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCHHHHHHHCCHH
QVFVLKEGVAGWAGENLPLVRGK
HEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796