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The map label for this gene is yibD [H]

Identifier: 170679583

GI number: 170679583

Start: 4030264

End: 4031298

Strand: Reverse

Name: yibD [H]

Synonym: EcSMS35_3951

Alternate gene names: 170679583

Gene position: 4031298-4030264 (Counterclockwise)

Preceding gene: 170683839

Following gene: 170679980

Centisome position: 79.54

GC content: 46.47

Gene sequence:

>1035_bases
ATGATGAACAGCACTAATAAACTAAGTGTTATTATCCCGTTATATAATGCGGGCGATGATTTCAGCGCTTGCATGGAATC
TTTAATCGCGCAAACCTGGACTGCTCTGGAAATCATTATTATTAACGATGGTTCAACGGATAATTCTGTTGAAATAGCAA
AGCATTACGCAGAAAACTATCCGCACGTTCGTTTGTTGCATCAGGCGAATGCTGGCGCATCGGTGGCGCGTAATCGTGGG
ATCGAGGTGGCGACGGGCAAATATGTCGCTTTTGTCGATGCTGACGATGAGGTGTATCCCACCATGTACGAAACGCTGAT
GACCATGGCGTTAGAGGACGACCTCGACGTGGCGCAGTGCAACGCTGATTGGTGTTTTCGTGAAACGGGTGAAACCTGGC
AATCCATCCCTACCGATCGCCTTCGCTCAACCGGTGTATTAACCGGTCCGGACTGGCTGCGGATGGGGCTTTCTTCCCGC
CGTTGGACACACGTGGTCTGGATGGGGGTTTATCGCCGCGATGTTATTGTTAAAAATAACATTAAATTTATTGCCGGATT
ACATCATCAGGATATTGTCTGGACAACAGAATTTATGTTTAACGCGCTGCGTGCGCGATATACCGAGCAATCATTATATA
AATATTATCTGCATAATACGTCAGTGAGTCGGTTGAACAGACAAGGGAACAAAAACCTTAATTATCAACGTCACTATATT
AAGATTACCCGCCTGCTGGAGAAATTAAATCGAAATTATGCCGACAAAATTACGATTTATCCGGAATTTCATCAGCAAAT
AACCTACGAAGCATTGCGTGTTTGCCATGCGGTGCGCAAAGAGCCGGATATTATTACCCGCCAACGGATGATTGCCGAGA
TATTTACTTCCGGTATGTATAAGCGCCTGATTACCAATGTGCGCAGCGTGAAGGTGGGTTATCAGGCGTTACTGTGGTCT
TTCCGCTTATGGCAATGGCGCGACAAAACGCGGTCGCACCATCGCATTACGCGTAGCGCCTTTAATTTGCGCTAG

Upstream 100 bases:

>100_bases
TGACTCTCTCACCGGTAAAAATAATATCTCACAGGCTTAATAGTTTCTTAATACAAAGCCTGTAAAACGTCAGGGTAACT
TCAGAGATCGTTGGTAATTT

Downstream 100 bases:

>100_bases
CGTTAAGCTTCGCCGCTTGAGGCTGTTTGCCCCAGCCTTGCCACTGATGCTGGAAGTAAACGATCAGCGTGCTCTGGCTG
ATGCTTTCGCTTAATACTTC

Product: putative glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MMNSTNKLSVIIPLYNAGDDFSACMESLIAQTWTALEIIIINDGSTDNSVEIAKHYAENYPHVRLLHQANAGASVARNRG
IEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSR
RWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLNRQGNKNLNYQRHYI
KITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRKEPDIITRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWS
FRLWQWRDKTRSHHRITRSAFNLR

Sequences:

>Translated_344_residues
MMNSTNKLSVIIPLYNAGDDFSACMESLIAQTWTALEIIIINDGSTDNSVEIAKHYAENYPHVRLLHQANAGASVARNRG
IEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSR
RWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLNRQGNKNLNYQRHYI
KITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRKEPDIITRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWS
FRLWQWRDKTRSHHRITRSAFNLR
>Mature_344_residues
MMNSTNKLSVIIPLYNAGDDFSACMESLIAQTWTALEIIIINDGSTDNSVEIAKHYAENYPHVRLLHQANAGASVARNRG
IEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSR
RWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLNRQGNKNLNYQRHYI
KITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRKEPDIITRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWS
FRLWQWRDKTRSHHRITRSAFNLR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=344, Percent_Identity=97.9651162790698, Blast_Score=707, Evalue=0.0,
Organism=Escherichia coli, GI1787259, Length=95, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40317; Mature: 40317

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNSTNKLSVIIPLYNAGDDFSACMESLIAQTWTALEIIIINDGSTDNSVEIAKHYAENY
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCC
PHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQC
CCEEEEEECCCCHHHHHCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHC
NADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNN
CCCHHHHHCCHHHHCCCHHHHHCCCCCCCCHHHHHCCCCCCCEEEEEEEHHHCCEEEECC
IKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLNRQGNKNLNYQRHYI
CEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHH
KITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRKEPDIITRQRMIAEIFTSGMY
HHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMNSTNKLSVIIPLYNAGDDFSACMESLIAQTWTALEIIIINDGSTDNSVEIAKHYAENY
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCC
PHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQC
CCEEEEEECCCCHHHHHCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHC
NADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNN
CCCHHHHHCCHHHHCCCHHHHHCCCCCCCCHHHHHCCCCCCCEEEEEEEHHHCCEEEECC
IKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLNRQGNKNLNYQRHYI
CEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHH
KITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRKEPDIITRQRMIAEIFTSGMY
HHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]