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The map label for this gene is yqgF [C]

Identifier: 170077568

GI number: 170077568

Start: 976703

End: 977137

Strand: Reverse

Name: yqgF [C]

Synonym: SYNPCC7002_A0946

Alternate gene names: 170077568

Gene position: 977137-976703 (Counterclockwise)

Preceding gene: 170077569

Following gene: 170077563

Centisome position: 32.48

GC content: 52.18

Gene sequence:

>435_bases
ATGAAACCAGTGGCAGCATTGGGCCTGGATATTGGCCGTAAACGTATTGGGGTGGCTGGCTGTGATGGTCTGGGGCTGTT
GGCGACGGCTTTGACCACCATTCAACGCACTACCCTAGAGGCAGATTTAGCGGCGATCGCCCATTGGATCGAACAGCGCC
ATATTCAAGTTTTGGTGGTGGGTCTGCCCTATGCCATGGACGGCAGCCTAGGGAAACAGGCGAAACAAACTCAAAAATTT
GCCCGTAAATTGGCAGAAGCCTTTGGACTCCCCATCGAGTATGTGGACGAACGCTTAACCTCCGTTGAAGCCGAAAACCA
ACTCAAAGCCGAAAAGCAATATGACCGCCAACAAAAGGGCCTCGTCGATCAGCGGGCAGCCCAAATTATTTTGCAACAGT
GGCTAGAAACGAGACAGTGTGCCTCGAAACCTTAG

Upstream 100 bases:

>100_bases
AATCCCCAGCCGCATCCATTGGTTTAAAAATCATCCCAGCCTAAAATTGCCAAAGGAATCACCGCAGCGGGATTTCTTCC
CGGAAAATTAGGCACAGCAG

Downstream 100 bases:

>100_bases
GTGACAGCATCAGAATTCCCTGAAGCGAACAATTCAAAGGCTTTTTGGGAAAATCGTTGGAGGCGATCGCAGACATCTTT
AGCGGGTTGATAGTCGCCGA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKPVAALGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVVGLPYAMDGSLGKQAKQTQKF
ARKLAEAFGLPIEYVDERLTSVEAENQLKAEKQYDRQQKGLVDQRAAQIILQQWLETRQCASKP

Sequences:

>Translated_144_residues
MKPVAALGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVVGLPYAMDGSLGKQAKQTQKF
ARKLAEAFGLPIEYVDERLTSVEAENQLKAEKQYDRQQKGLVDQRAAQIILQQWLETRQCASKP
>Mature_144_residues
MKPVAALGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVVGLPYAMDGSLGKQAKQTQKF
ARKLAEAFGLPIEYVDERLTSVEAENQLKAEKQYDRQQKGLVDQRAAQIILQQWLETRQCASKP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=130, Percent_Identity=33.0769230769231, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_SYNP2 (B1XJ08)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734206.1
- ProteinModelPortal:   B1XJ08
- SMR:   B1XJ08
- GeneID:   6056953
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0946
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15894; Mature: 15894

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVAALGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVV
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
GLPYAMDGSLGKQAKQTQKFARKLAEAFGLPIEYVDERLTSVEAENQLKAEKQYDRQQKG
ECCCHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LVDQRAAQIILQQWLETRQCASKP
HHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKPVAALGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVV
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
GLPYAMDGSLGKQAKQTQKFARKLAEAFGLPIEYVDERLTSVEAENQLKAEKQYDRQQKG
ECCCHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LVDQRAAQIILQQWLETRQCASKP
HHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA